Hb_003106_190

Information

Type -
Description -
Location Contig3106: 136242-141800
Sequence    

Annotation

kegg
ID rcu:RCOM_1512230
description Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative (EC:3.2.1.113)
nr
ID XP_002511454.1
description Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
swissprot
ID Q9SXC9
description Probable alpha-mannosidase I MNS5 OS=Arabidopsis thaliana GN=MNS5 PE=2 SV=1
trembl
ID B9RB79
description alpha-1,2-Mannosidase OS=Ricinus communis GN=RCOM_1512230 PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable alpha-mannosidase i mns5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32894: 136241-137499 , PASA_asmbl_32896: 138698-139939 , PASA_asmbl_32897: 139274-139942 , PASA_asmbl_32898: 139948-141680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_190 0.0 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
2 Hb_002811_010 0.0761116356 - - cysteine synthase, putative [Ricinus communis]
3 Hb_000613_110 0.0821268698 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
4 Hb_000359_210 0.0832532509 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003994_110 0.0841416574 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
6 Hb_000684_210 0.0844775117 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
7 Hb_000077_150 0.0849497123 - - PREDICTED: riboflavin synthase [Jatropha curcas]
8 Hb_000789_200 0.0871418902 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
9 Hb_032920_050 0.0922238584 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
10 Hb_005731_160 0.0925517505 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_000062_510 0.0954809113 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
12 Hb_023988_030 0.0957026929 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
13 Hb_003206_110 0.0975354638 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
14 Hb_002232_390 0.0998185547 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
15 Hb_001449_070 0.0999395539 - - conserved hypothetical protein [Ricinus communis]
16 Hb_170138_010 0.1001552122 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000613_070 0.1010396651 - - -
18 Hb_001999_210 0.1013579965 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
19 Hb_000270_390 0.1017392872 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
20 Hb_000130_320 0.1021535651 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]

Gene co-expression network

sample Hb_003106_190 Hb_003106_190 Hb_002811_010 Hb_002811_010 Hb_003106_190--Hb_002811_010 Hb_000613_110 Hb_000613_110 Hb_003106_190--Hb_000613_110 Hb_000359_210 Hb_000359_210 Hb_003106_190--Hb_000359_210 Hb_003994_110 Hb_003994_110 Hb_003106_190--Hb_003994_110 Hb_000684_210 Hb_000684_210 Hb_003106_190--Hb_000684_210 Hb_000077_150 Hb_000077_150 Hb_003106_190--Hb_000077_150 Hb_005731_160 Hb_005731_160 Hb_002811_010--Hb_005731_160 Hb_055619_010 Hb_055619_010 Hb_002811_010--Hb_055619_010 Hb_002811_010--Hb_000613_110 Hb_000120_290 Hb_000120_290 Hb_002811_010--Hb_000120_290 Hb_002811_010--Hb_000077_150 Hb_000613_110--Hb_005731_160 Hb_032920_050 Hb_032920_050 Hb_000613_110--Hb_032920_050 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_000613_110--Hb_003994_110 Hb_002897_090 Hb_002897_090 Hb_000359_210--Hb_002897_090 Hb_002027_080 Hb_002027_080 Hb_000359_210--Hb_002027_080 Hb_001195_400 Hb_001195_400 Hb_000359_210--Hb_001195_400 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_004679_030 Hb_004679_030 Hb_000359_210--Hb_004679_030 Hb_003206_110 Hb_003206_110 Hb_000359_210--Hb_003206_110 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_003994_110--Hb_032920_050 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090 Hb_000645_280 Hb_000645_280 Hb_000684_210--Hb_000645_280 Hb_000684_210--Hb_000359_210 Hb_170138_010 Hb_170138_010 Hb_000684_210--Hb_170138_010 Hb_001662_100 Hb_001662_100 Hb_000684_210--Hb_001662_100 Hb_009569_040 Hb_009569_040 Hb_000684_210--Hb_009569_040 Hb_004644_030 Hb_004644_030 Hb_000077_150--Hb_004644_030 Hb_002762_110 Hb_002762_110 Hb_000077_150--Hb_002762_110 Hb_001214_050 Hb_001214_050 Hb_000077_150--Hb_001214_050 Hb_002078_340 Hb_002078_340 Hb_000077_150--Hb_002078_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83116 4.19378 5.48071 9.89766 4.43746 6.62303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.63487 6.27916 4.98105 8.71648 19.0424

CAGE analysis