Hb_055619_010

Information

Type -
Description -
Location Contig55619: 614-3801
Sequence    

Annotation

kegg
ID rcu:RCOM_1326970
description ATP binding protein, putative
nr
ID XP_012070228.1
description PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02542 PE=4 SV=1
Gene Ontology
ID GO:0009507
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48535: 2463-3350 , PASA_asmbl_48536: 1787-3402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055619_010 0.0 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
2 Hb_002811_010 0.0624700854 - - cysteine synthase, putative [Ricinus communis]
3 Hb_005731_160 0.0806420038 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_007534_050 0.0813867607 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001578_020 0.0842114509 - - Protein virR, putative [Ricinus communis]
6 Hb_004440_060 0.0964655031 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_004644_030 0.0984679697 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
8 Hb_005127_030 0.1019749496 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_000613_110 0.102647259 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
10 Hb_003106_190 0.1078794321 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
11 Hb_000077_150 0.1085483795 - - PREDICTED: riboflavin synthase [Jatropha curcas]
12 Hb_035273_020 0.1130186137 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
13 Hb_001946_390 0.1151189187 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
14 Hb_016219_030 0.1152089359 - - cytochrome P450, putative [Ricinus communis]
15 Hb_012150_030 0.1156145323 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
16 Hb_001449_070 0.1158981247 - - conserved hypothetical protein [Ricinus communis]
17 Hb_048093_010 0.1166092583 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
18 Hb_000788_020 0.1166181508 - - PREDICTED: uncharacterized protein LOC105629709 isoform X1 [Jatropha curcas]
19 Hb_000317_260 0.1169829194 - - unknown [Populus trichocarpa]
20 Hb_000032_500 0.1170242623 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_055619_010 Hb_055619_010 Hb_002811_010 Hb_002811_010 Hb_055619_010--Hb_002811_010 Hb_005731_160 Hb_005731_160 Hb_055619_010--Hb_005731_160 Hb_007534_050 Hb_007534_050 Hb_055619_010--Hb_007534_050 Hb_001578_020 Hb_001578_020 Hb_055619_010--Hb_001578_020 Hb_004440_060 Hb_004440_060 Hb_055619_010--Hb_004440_060 Hb_004644_030 Hb_004644_030 Hb_055619_010--Hb_004644_030 Hb_002811_010--Hb_005731_160 Hb_003106_190 Hb_003106_190 Hb_002811_010--Hb_003106_190 Hb_000613_110 Hb_000613_110 Hb_002811_010--Hb_000613_110 Hb_000120_290 Hb_000120_290 Hb_002811_010--Hb_000120_290 Hb_000077_150 Hb_000077_150 Hb_002811_010--Hb_000077_150 Hb_005731_160--Hb_000613_110 Hb_002758_010 Hb_002758_010 Hb_005731_160--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_005731_160--Hb_000130_320 Hb_000648_040 Hb_000648_040 Hb_005731_160--Hb_000648_040 Hb_007534_050--Hb_004440_060 Hb_005127_030 Hb_005127_030 Hb_007534_050--Hb_005127_030 Hb_007534_050--Hb_001578_020 Hb_007534_050--Hb_002811_010 Hb_000317_260 Hb_000317_260 Hb_007534_050--Hb_000317_260 Hb_001578_020--Hb_004440_060 Hb_001578_020--Hb_004644_030 Hb_008147_080 Hb_008147_080 Hb_001578_020--Hb_008147_080 Hb_001578_020--Hb_002811_010 Hb_004440_060--Hb_000317_260 Hb_001369_790 Hb_001369_790 Hb_004440_060--Hb_001369_790 Hb_002053_010 Hb_002053_010 Hb_004440_060--Hb_002053_010 Hb_004440_060--Hb_004644_030 Hb_002762_110 Hb_002762_110 Hb_004644_030--Hb_002762_110 Hb_004644_030--Hb_000077_150 Hb_000622_290 Hb_000622_290 Hb_004644_030--Hb_000622_290 Hb_004644_030--Hb_008147_080 Hb_003053_110 Hb_003053_110 Hb_004644_030--Hb_003053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70262 1.94876 5.71762 5.92463 2.13854 4.92281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3461 5.2644 2.93324 4.48074 11.3608

CAGE analysis