Hb_002811_010

Information

Type -
Description -
Location Contig2811: 6721-10117
Sequence    

Annotation

kegg
ID rcu:RCOM_1428720
description cysteine synthase, putative (EC:2.5.1.51)
nr
ID XP_002512257.1
description cysteine synthase, putative [Ricinus communis]
swissprot
ID P53206
description Putative cysteine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR012W PE=1 SV=1
trembl
ID B9RET8
description Cysteine synthase, putative OS=Ricinus communis GN=RCOM_1428720 PE=4 SV=1
Gene Ontology
ID GO:0004124
description cysteine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29374: 6691-9868 , PASA_asmbl_29375: 6691-10097 , PASA_asmbl_29376: 6712-10097
cDNA
(Sanger)
(ID:Location)		 016_D11.ab1: 6668-8137 , 032_G16.ab1: 6691-8271

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_010 0.0 - - cysteine synthase, putative [Ricinus communis]
2 Hb_005731_160 0.0468953117 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_055619_010 0.0624700854 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
4 Hb_003106_190 0.0761116356 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
5 Hb_000613_110 0.0780668772 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
6 Hb_000120_290 0.0836677816 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]
7 Hb_000077_150 0.0876176722 - - PREDICTED: riboflavin synthase [Jatropha curcas]
8 Hb_035273_020 0.090049858 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
9 Hb_001578_020 0.0963556742 - - Protein virR, putative [Ricinus communis]
10 Hb_004644_030 0.0965362702 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
11 Hb_002078_340 0.0978610669 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
12 Hb_012627_040 0.0978795466 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
13 Hb_012150_030 0.0987723522 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_007534_050 0.098772444 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000212_440 0.1000900819 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_003376_230 0.100283047 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
17 Hb_005127_030 0.1007368799 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_002014_030 0.1017119254 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
19 Hb_032920_050 0.1023193229 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
20 Hb_006059_030 0.1032037556 - - glutamate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002811_010 Hb_002811_010 Hb_005731_160 Hb_005731_160 Hb_002811_010--Hb_005731_160 Hb_055619_010 Hb_055619_010 Hb_002811_010--Hb_055619_010 Hb_003106_190 Hb_003106_190 Hb_002811_010--Hb_003106_190 Hb_000613_110 Hb_000613_110 Hb_002811_010--Hb_000613_110 Hb_000120_290 Hb_000120_290 Hb_002811_010--Hb_000120_290 Hb_000077_150 Hb_000077_150 Hb_002811_010--Hb_000077_150 Hb_005731_160--Hb_000613_110 Hb_002758_010 Hb_002758_010 Hb_005731_160--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_005731_160--Hb_000130_320 Hb_005731_160--Hb_055619_010 Hb_000648_040 Hb_000648_040 Hb_005731_160--Hb_000648_040 Hb_007534_050 Hb_007534_050 Hb_055619_010--Hb_007534_050 Hb_001578_020 Hb_001578_020 Hb_055619_010--Hb_001578_020 Hb_004440_060 Hb_004440_060 Hb_055619_010--Hb_004440_060 Hb_004644_030 Hb_004644_030 Hb_055619_010--Hb_004644_030 Hb_003106_190--Hb_000613_110 Hb_000359_210 Hb_000359_210 Hb_003106_190--Hb_000359_210 Hb_003994_110 Hb_003994_110 Hb_003106_190--Hb_003994_110 Hb_000684_210 Hb_000684_210 Hb_003106_190--Hb_000684_210 Hb_003106_190--Hb_000077_150 Hb_032920_050 Hb_032920_050 Hb_000613_110--Hb_032920_050 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_000613_110--Hb_003994_110 Hb_000120_290--Hb_005731_160 Hb_012627_040 Hb_012627_040 Hb_000120_290--Hb_012627_040 Hb_002811_130 Hb_002811_130 Hb_000120_290--Hb_002811_130 Hb_003376_230 Hb_003376_230 Hb_000120_290--Hb_003376_230 Hb_000465_190 Hb_000465_190 Hb_000120_290--Hb_000465_190 Hb_000077_150--Hb_004644_030 Hb_002762_110 Hb_002762_110 Hb_000077_150--Hb_002762_110 Hb_001214_050 Hb_001214_050 Hb_000077_150--Hb_001214_050 Hb_002078_340 Hb_002078_340 Hb_000077_150--Hb_002078_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.04299 7.13728 16.9308 18.248 9.70833 14.9667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.306 18.336 10.4966 19.4193 39.7316

CAGE analysis