Hb_000010_290

Information

Type -
Description -
Location Contig10: 327874-330404
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_290 0.0 - - -
2 Hb_002518_120 0.0991803864 - - hypothetical protein RCOM_0731250 [Ricinus communis]
3 Hb_000676_200 0.1109934808 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
4 Hb_001824_090 0.1217554494 - - -
5 Hb_003544_010 0.1244846997 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_003475_020 0.1250241901 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
7 Hb_003994_110 0.1253088688 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
8 Hb_003106_190 0.1285179393 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
9 Hb_000197_220 0.1304412128 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
10 Hb_000914_100 0.1315891787 - - unknown [Glycine max]
11 Hb_000648_040 0.1349530876 - - unknown [Populus trichocarpa]
12 Hb_023988_030 0.1358528295 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
13 Hb_000613_110 0.1382811068 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
14 Hb_001080_070 0.1390925478 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
15 Hb_000062_510 0.1451511871 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
16 Hb_000077_150 0.1459066763 - - PREDICTED: riboflavin synthase [Jatropha curcas]
17 Hb_030131_030 0.1494727825 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
18 Hb_002282_070 0.1496733006 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
19 Hb_001427_040 0.1498583096 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
20 Hb_007101_080 0.1500213255 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000010_290 Hb_000010_290 Hb_002518_120 Hb_002518_120 Hb_000010_290--Hb_002518_120 Hb_000676_200 Hb_000676_200 Hb_000010_290--Hb_000676_200 Hb_001824_090 Hb_001824_090 Hb_000010_290--Hb_001824_090 Hb_003544_010 Hb_003544_010 Hb_000010_290--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_000010_290--Hb_003475_020 Hb_003994_110 Hb_003994_110 Hb_000010_290--Hb_003994_110 Hb_032258_010 Hb_032258_010 Hb_002518_120--Hb_032258_010 Hb_015026_080 Hb_015026_080 Hb_002518_120--Hb_015026_080 Hb_002282_070 Hb_002282_070 Hb_002518_120--Hb_002282_070 Hb_002518_120--Hb_003475_020 Hb_030131_030 Hb_030131_030 Hb_002518_120--Hb_030131_030 Hb_000676_200--Hb_003475_020 Hb_002374_250 Hb_002374_250 Hb_000676_200--Hb_002374_250 Hb_002631_250 Hb_002631_250 Hb_000676_200--Hb_002631_250 Hb_000676_200--Hb_030131_030 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080 Hb_001824_090--Hb_003994_110 Hb_000613_110 Hb_000613_110 Hb_001824_090--Hb_000613_110 Hb_007101_080 Hb_007101_080 Hb_001824_090--Hb_007101_080 Hb_002078_340 Hb_002078_340 Hb_001824_090--Hb_002078_340 Hb_003376_230 Hb_003376_230 Hb_001824_090--Hb_003376_230 Hb_000077_150 Hb_000077_150 Hb_001824_090--Hb_000077_150 Hb_003544_010--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003544_010--Hb_011386_020 Hb_003544_010--Hb_005282_020 Hb_003544_010--Hb_001824_090 Hb_000012_160 Hb_000012_160 Hb_003544_010--Hb_000012_160 Hb_003544_010--Hb_003475_020 Hb_003475_020--Hb_003994_110 Hb_001790_080 Hb_001790_080 Hb_003475_020--Hb_001790_080 Hb_000130_320 Hb_000130_320 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_003475_020--Hb_002282_070 Hb_003994_110--Hb_000613_110 Hb_032920_050 Hb_032920_050 Hb_003994_110--Hb_032920_050 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.53703 0.276562 0.448642 0.710655 0.568744 0.461487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.465198 0.68895 0.406174 1.12413 2.71469

CAGE analysis