Hb_032258_010

Information

Type -
Description -
Location Contig32258: 5007-6666
Sequence    

Annotation

kegg
ID pop:POPTR_0013s025001
description hypothetical protein
nr
ID XP_006375769.1
description hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
swissprot
ID Q9FR37
description Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1
trembl
ID U5FUG3
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s025001g PE=4 SV=1
Gene Ontology
ID GO:0016884
description amidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032258_010 0.0 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
2 Hb_001427_040 0.1004341848 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
3 Hb_002518_120 0.1157233288 - - hypothetical protein RCOM_0731250 [Ricinus communis]
4 Hb_002282_070 0.1231691553 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
5 Hb_000220_210 0.1247870196 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
6 Hb_002542_160 0.1297476625 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
7 Hb_155832_010 0.1426279884 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_016461_030 0.1455031374 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_007894_220 0.1466192052 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
10 Hb_004108_060 0.1472880302 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
11 Hb_030131_030 0.1481123692 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
12 Hb_004884_180 0.1496110294 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
13 Hb_000010_290 0.1506769324 - - -
14 Hb_015026_080 0.1507877772 - - -
15 Hb_000345_370 0.1509588682 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
16 Hb_001623_280 0.1523079666 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
17 Hb_000087_140 0.1528010417 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
18 Hb_001117_200 0.1535061642 transcription factor TF Family: SWI/SNF-BAF60b conserved hypothetical protein [Ricinus communis]
19 Hb_002639_110 0.1557209124 - - hypothetical protein L484_011673 [Morus notabilis]
20 Hb_003038_200 0.1560163047 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_032258_010 Hb_032258_010 Hb_001427_040 Hb_001427_040 Hb_032258_010--Hb_001427_040 Hb_002518_120 Hb_002518_120 Hb_032258_010--Hb_002518_120 Hb_002282_070 Hb_002282_070 Hb_032258_010--Hb_002282_070 Hb_000220_210 Hb_000220_210 Hb_032258_010--Hb_000220_210 Hb_002542_160 Hb_002542_160 Hb_032258_010--Hb_002542_160 Hb_155832_010 Hb_155832_010 Hb_032258_010--Hb_155832_010 Hb_001427_040--Hb_002282_070 Hb_001427_040--Hb_000220_210 Hb_016461_030 Hb_016461_030 Hb_001427_040--Hb_016461_030 Hb_001427_040--Hb_002542_160 Hb_000345_370 Hb_000345_370 Hb_001427_040--Hb_000345_370 Hb_002660_190 Hb_002660_190 Hb_001427_040--Hb_002660_190 Hb_000010_290 Hb_000010_290 Hb_002518_120--Hb_000010_290 Hb_015026_080 Hb_015026_080 Hb_002518_120--Hb_015026_080 Hb_002518_120--Hb_002282_070 Hb_003475_020 Hb_003475_020 Hb_002518_120--Hb_003475_020 Hb_030131_030 Hb_030131_030 Hb_002518_120--Hb_030131_030 Hb_002282_070--Hb_016461_030 Hb_002282_070--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_002282_070--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060 Hb_000220_210--Hb_002542_160 Hb_000309_020 Hb_000309_020 Hb_000220_210--Hb_000309_020 Hb_000220_210--Hb_000345_370 Hb_001472_160 Hb_001472_160 Hb_000220_210--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000220_210--Hb_004884_180 Hb_002542_160--Hb_000309_020 Hb_002542_160--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_002542_160--Hb_000085_070 Hb_002542_160--Hb_016461_030 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_000529_180 Hb_000529_180 Hb_155832_010--Hb_000529_180 Hb_000099_160 Hb_000099_160 Hb_155832_010--Hb_000099_160 Hb_000046_540 Hb_000046_540 Hb_155832_010--Hb_000046_540 Hb_004108_060 Hb_004108_060 Hb_155832_010--Hb_004108_060 Hb_002639_110 Hb_002639_110 Hb_155832_010--Hb_002639_110 Hb_002078_340 Hb_002078_340 Hb_155832_010--Hb_002078_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60686 1.47597 3.65467 1.03701 2.93479 1.87498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5265 1.7865 1.35512 4.4413 10.1002

CAGE analysis