Hb_000099_160

Information

Type -
Description -
Location Contig99: 202436-208955
Sequence    

Annotation

kegg
ID tcc:TCM_016366
description Potassium transporter family protein isoform 1
nr
ID XP_011022592.1
description PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
swissprot
ID Q9FE38
description Potassium transporter 3 OS=Arabidopsis thaliana GN=POT3 PE=1 SV=1
trembl
ID A0A061G5M9
description Potassium transporter OS=Theobroma cacao GN=TCM_016366 PE=3 SV=1
Gene Ontology
ID GO:0005774
description potassium transporter 3 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64739: 201276-201737 , PASA_asmbl_64741: 203797-206200 , PASA_asmbl_64742: 206657-206915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_160 0.0 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
2 Hb_188281_040 0.0798287665 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
3 Hb_001936_090 0.0835346887 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
4 Hb_000720_050 0.0842611349 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
5 Hb_001347_060 0.0847959064 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_010294_010 0.0872858739 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
7 Hb_007765_100 0.0877343545 - - PREDICTED: helicase SKI2W [Jatropha curcas]
8 Hb_000906_100 0.0883455285 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
9 Hb_000441_090 0.0884640394 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
10 Hb_000347_430 0.0893890076 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
11 Hb_073171_070 0.0900268203 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
12 Hb_000473_110 0.0910856753 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
13 Hb_000363_310 0.0933502588 - - DNA topoisomerase type I, putative [Ricinus communis]
14 Hb_003020_030 0.0949743158 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
15 Hb_002027_080 0.0954743099 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
16 Hb_000445_090 0.0955302264 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
17 Hb_002217_250 0.0963047054 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009288_020 0.0972796921 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
19 Hb_026053_040 0.0979718939 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001157_240 0.0979767765 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]

Gene co-expression network

sample Hb_000099_160 Hb_000099_160 Hb_188281_040 Hb_188281_040 Hb_000099_160--Hb_188281_040 Hb_001936_090 Hb_001936_090 Hb_000099_160--Hb_001936_090 Hb_000720_050 Hb_000720_050 Hb_000099_160--Hb_000720_050 Hb_001347_060 Hb_001347_060 Hb_000099_160--Hb_001347_060 Hb_010294_010 Hb_010294_010 Hb_000099_160--Hb_010294_010 Hb_007765_100 Hb_007765_100 Hb_000099_160--Hb_007765_100 Hb_001789_110 Hb_001789_110 Hb_188281_040--Hb_001789_110 Hb_000406_200 Hb_000406_200 Hb_188281_040--Hb_000406_200 Hb_003117_030 Hb_003117_030 Hb_188281_040--Hb_003117_030 Hb_005489_040 Hb_005489_040 Hb_188281_040--Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_001936_090--Hb_000720_050 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_001936_090--Hb_000130_320 Hb_001936_090--Hb_188281_040 Hb_001936_090--Hb_001347_060 Hb_000720_050--Hb_001789_110 Hb_000720_050--Hb_188281_040 Hb_001008_120 Hb_001008_120 Hb_000720_050--Hb_001008_120 Hb_000441_090 Hb_000441_090 Hb_000720_050--Hb_000441_090 Hb_000789_200 Hb_000789_200 Hb_000720_050--Hb_000789_200 Hb_000347_430 Hb_000347_430 Hb_001347_060--Hb_000347_430 Hb_008033_040 Hb_008033_040 Hb_001347_060--Hb_008033_040 Hb_004108_160 Hb_004108_160 Hb_001347_060--Hb_004108_160 Hb_001347_060--Hb_000363_310 Hb_001347_060--Hb_000406_200 Hb_000667_030 Hb_000667_030 Hb_010294_010--Hb_000667_030 Hb_002301_300 Hb_002301_300 Hb_010294_010--Hb_002301_300 Hb_002026_150 Hb_002026_150 Hb_010294_010--Hb_002026_150 Hb_011228_010 Hb_011228_010 Hb_010294_010--Hb_011228_010 Hb_000960_040 Hb_000960_040 Hb_010294_010--Hb_000960_040 Hb_012330_010 Hb_012330_010 Hb_010294_010--Hb_012330_010 Hb_000665_120 Hb_000665_120 Hb_007765_100--Hb_000665_120 Hb_008059_010 Hb_008059_010 Hb_007765_100--Hb_008059_010 Hb_170416_010 Hb_170416_010 Hb_007765_100--Hb_170416_010 Hb_002218_090 Hb_002218_090 Hb_007765_100--Hb_002218_090 Hb_007765_100--Hb_000363_310 Hb_001226_150 Hb_001226_150 Hb_007765_100--Hb_001226_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.98515 5.06263 5.8087 5.50752 7.66336 3.64049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88094 3.74701 5.25543 6.15994 10.6458

CAGE analysis