Hb_029584_070

Information

Type -
Description -
Location Contig29584: 28830-30272
Sequence    

Annotation

kegg
ID cic:CICLE_v10008172mg
description hypothetical protein
nr
ID XP_012076785.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
swissprot
ID Q9ZQE5
description Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2
trembl
ID A0A067KNA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07306 PE=4 SV=1
Gene Ontology
ID GO:0005737
description pentatricopeptide repeat-containing protein at2g15690-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30918: 28741-29660 , PASA_asmbl_30920: 30928-31598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
2 Hb_001936_090 0.0605735765 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
3 Hb_001790_080 0.0763645314 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
4 Hb_000130_260 0.0831815337 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
5 Hb_003020_030 0.0886370414 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
6 Hb_000445_090 0.0903872186 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
7 Hb_001163_060 0.0942040139 - - neutral/alkaline invertase [Manihot esculenta]
8 Hb_017469_110 0.0975002583 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
9 Hb_002758_010 0.0990210222 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
10 Hb_000025_270 0.1001816745 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
11 Hb_000482_190 0.1002228948 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
12 Hb_000033_110 0.1008182547 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
13 Hb_000130_320 0.1012452496 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
14 Hb_002232_390 0.1018068225 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
15 Hb_002631_250 0.1027491002 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
16 Hb_000720_050 0.1031381564 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
17 Hb_001347_060 0.1050482786 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
18 Hb_000613_110 0.105323632 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
19 Hb_013405_080 0.1064028009 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
20 Hb_000349_240 0.1070524428 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_029584_070 Hb_029584_070 Hb_001936_090 Hb_001936_090 Hb_029584_070--Hb_001936_090 Hb_001790_080 Hb_001790_080 Hb_029584_070--Hb_001790_080 Hb_000130_260 Hb_000130_260 Hb_029584_070--Hb_000130_260 Hb_003020_030 Hb_003020_030 Hb_029584_070--Hb_003020_030 Hb_000445_090 Hb_000445_090 Hb_029584_070--Hb_000445_090 Hb_001163_060 Hb_001163_060 Hb_029584_070--Hb_001163_060 Hb_000720_050 Hb_000720_050 Hb_001936_090--Hb_000720_050 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_001936_090--Hb_000130_320 Hb_188281_040 Hb_188281_040 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_001790_080--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_001790_080--Hb_000349_240 Hb_001790_080--Hb_001163_060 Hb_003475_020 Hb_003475_020 Hb_001790_080--Hb_003475_020 Hb_001790_080--Hb_001936_090 Hb_000130_260--Hb_001790_080 Hb_000130_260--Hb_002758_010 Hb_000130_260--Hb_001936_090 Hb_001080_090 Hb_001080_090 Hb_000130_260--Hb_001080_090 Hb_004899_260 Hb_004899_260 Hb_000130_260--Hb_004899_260 Hb_000025_270 Hb_000025_270 Hb_003020_030--Hb_000025_270 Hb_001008_120 Hb_001008_120 Hb_003020_030--Hb_001008_120 Hb_036790_080 Hb_036790_080 Hb_003020_030--Hb_036790_080 Hb_003020_030--Hb_001936_090 Hb_000033_110 Hb_000033_110 Hb_003020_030--Hb_000033_110 Hb_006483_110 Hb_006483_110 Hb_003020_030--Hb_006483_110 Hb_000445_090--Hb_001163_060 Hb_000193_330 Hb_000193_330 Hb_000445_090--Hb_000193_330 Hb_000635_060 Hb_000635_060 Hb_000445_090--Hb_000635_060 Hb_000181_340 Hb_000181_340 Hb_000445_090--Hb_000181_340 Hb_009288_020 Hb_009288_020 Hb_000445_090--Hb_009288_020 Hb_002539_070 Hb_002539_070 Hb_000445_090--Hb_002539_070 Hb_001163_060--Hb_000193_330 Hb_002769_030 Hb_002769_030 Hb_001163_060--Hb_002769_030 Hb_000365_240 Hb_000365_240 Hb_001163_060--Hb_000365_240 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_004003_040 Hb_004003_040 Hb_001163_060--Hb_004003_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0244 8.17014 7.89895 6.91811 10.1193 8.49659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32321 8.1701 5.73544 6.60801 20.7665

CAGE analysis