Hb_001790_080

Information

Type -
Description -
Location Contig1790: 67835-77526
Sequence    

Annotation

kegg
ID rcu:RCOM_0852650
description hypothetical protein
nr
ID XP_012082331.1
description PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
swissprot
ID Q6YYA3
description Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1
trembl
ID B9RUG2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0852650 PE=4 SV=1
Gene Ontology
ID GO:0003723
description chloroplastic group iia intron splicing facilitator chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17310: 67880-76966 , PASA_asmbl_17311: 67880-68634 , PASA_asmbl_17314: 76985-77425
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001790_080 0.0 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
2 Hb_000130_320 0.0699293693 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
3 Hb_000349_240 0.0704672566 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
4 Hb_029584_070 0.0763645314 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
5 Hb_001163_060 0.0772830687 - - neutral/alkaline invertase [Manihot esculenta]
6 Hb_003475_020 0.0817637104 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
7 Hb_001936_090 0.0841363644 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
8 Hb_000087_140 0.08427958 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
9 Hb_000130_260 0.0869456397 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
10 Hb_007763_070 0.089160312 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
11 Hb_000007_010 0.089723549 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
12 Hb_002758_010 0.0911401564 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
13 Hb_013405_080 0.0914053036 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
14 Hb_000033_110 0.0914112799 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
15 Hb_017469_110 0.0937582997 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
16 Hb_000445_090 0.0947670573 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
17 Hb_000538_280 0.0959724129 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
18 Hb_006816_370 0.0961356432 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
19 Hb_004003_040 0.0961636398 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_005701_130 0.0962955379 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001790_080 Hb_001790_080 Hb_000130_320 Hb_000130_320 Hb_001790_080--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_001790_080--Hb_000349_240 Hb_029584_070 Hb_029584_070 Hb_001790_080--Hb_029584_070 Hb_001163_060 Hb_001163_060 Hb_001790_080--Hb_001163_060 Hb_003475_020 Hb_003475_020 Hb_001790_080--Hb_003475_020 Hb_001936_090 Hb_001936_090 Hb_001790_080--Hb_001936_090 Hb_000648_040 Hb_000648_040 Hb_000130_320--Hb_000648_040 Hb_002758_010 Hb_002758_010 Hb_000130_320--Hb_002758_010 Hb_032920_050 Hb_032920_050 Hb_000130_320--Hb_032920_050 Hb_000749_090 Hb_000749_090 Hb_000130_320--Hb_000749_090 Hb_000130_320--Hb_001936_090 Hb_018118_010 Hb_018118_010 Hb_000349_240--Hb_018118_010 Hb_009252_040 Hb_009252_040 Hb_000349_240--Hb_009252_040 Hb_000087_140 Hb_000087_140 Hb_000349_240--Hb_000087_140 Hb_000033_110 Hb_000033_110 Hb_000349_240--Hb_000033_110 Hb_000007_010 Hb_000007_010 Hb_000349_240--Hb_000007_010 Hb_029584_070--Hb_001936_090 Hb_000130_260 Hb_000130_260 Hb_029584_070--Hb_000130_260 Hb_003020_030 Hb_003020_030 Hb_029584_070--Hb_003020_030 Hb_000445_090 Hb_000445_090 Hb_029584_070--Hb_000445_090 Hb_029584_070--Hb_001163_060 Hb_001163_060--Hb_000445_090 Hb_000193_330 Hb_000193_330 Hb_001163_060--Hb_000193_330 Hb_002769_030 Hb_002769_030 Hb_001163_060--Hb_002769_030 Hb_000365_240 Hb_000365_240 Hb_001163_060--Hb_000365_240 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_004003_040 Hb_004003_040 Hb_001163_060--Hb_004003_040 Hb_003994_110 Hb_003994_110 Hb_003475_020--Hb_003994_110 Hb_000676_200 Hb_000676_200 Hb_003475_020--Hb_000676_200 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_002282_070 Hb_002282_070 Hb_003475_020--Hb_002282_070 Hb_000720_050 Hb_000720_050 Hb_001936_090--Hb_000720_050 Hb_001936_090--Hb_002758_010 Hb_188281_040 Hb_188281_040 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.57281 14.7572 12.1744 8.99583 10.9509 13.4945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.76599 10.7268 9.9298 10.1807 36.44

CAGE analysis