Hb_000676_200

Information

Type -
Description -
Location Contig676: 143271-148286
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13510g
description POPTRDRAFT_869356; hypothetical protein
nr
ID XP_012078408.1
description PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
swissprot
ID Q8H0V1
description CDK5RAP1-like protein OS=Arabidopsis thaliana GN=At4g36390 PE=2 SV=1
trembl
ID A0A067KLL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13682 PE=4 SV=1
Gene Ontology
ID GO:0016740
description cdk5rap1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53572: 143348-148294 , PASA_asmbl_53573: 144370-148271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_200 0.0 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
2 Hb_003475_020 0.0829441967 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
3 Hb_002374_250 0.0934090013 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002631_250 0.094981632 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
5 Hb_030131_030 0.0956261238 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
6 Hb_005282_020 0.1073178373 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
7 Hb_003878_080 0.1079309718 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
8 Hb_000010_290 0.1109934808 - - -
9 Hb_003089_020 0.1134868706 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
10 Hb_000318_130 0.1147258586 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001214_050 0.1171368679 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
12 Hb_004218_190 0.1182835326 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
13 Hb_008511_140 0.1184897018 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
14 Hb_003994_110 0.1189585156 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
15 Hb_002660_190 0.1219733542 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
16 Hb_000495_080 0.1220396071 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
17 Hb_001427_040 0.1224830117 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
18 Hb_003544_010 0.1239762809 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_003124_120 0.124152803 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
20 Hb_009178_060 0.1255745095 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000676_200 Hb_000676_200 Hb_003475_020 Hb_003475_020 Hb_000676_200--Hb_003475_020 Hb_002374_250 Hb_002374_250 Hb_000676_200--Hb_002374_250 Hb_002631_250 Hb_002631_250 Hb_000676_200--Hb_002631_250 Hb_030131_030 Hb_030131_030 Hb_000676_200--Hb_030131_030 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080 Hb_003994_110 Hb_003994_110 Hb_003475_020--Hb_003994_110 Hb_001790_080 Hb_001790_080 Hb_003475_020--Hb_001790_080 Hb_000130_320 Hb_000130_320 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_002282_070 Hb_002282_070 Hb_003475_020--Hb_002282_070 Hb_009778_060 Hb_009778_060 Hb_002374_250--Hb_009778_060 Hb_005511_150 Hb_005511_150 Hb_002374_250--Hb_005511_150 Hb_003089_020 Hb_003089_020 Hb_002374_250--Hb_003089_020 Hb_002374_250--Hb_030131_030 Hb_009178_060 Hb_009178_060 Hb_002374_250--Hb_009178_060 Hb_002631_250--Hb_030131_030 Hb_002631_250--Hb_001790_080 Hb_002631_250--Hb_003475_020 Hb_029584_070 Hb_029584_070 Hb_002631_250--Hb_029584_070 Hb_001623_280 Hb_001623_280 Hb_002631_250--Hb_001623_280 Hb_008511_140 Hb_008511_140 Hb_030131_030--Hb_008511_140 Hb_000069_490 Hb_000069_490 Hb_030131_030--Hb_000069_490 Hb_030131_030--Hb_003089_020 Hb_003544_010 Hb_003544_010 Hb_005282_020--Hb_003544_010 Hb_000012_160 Hb_000012_160 Hb_005282_020--Hb_000012_160 Hb_000608_170 Hb_000608_170 Hb_005282_020--Hb_000608_170 Hb_002685_060 Hb_002685_060 Hb_005282_020--Hb_002685_060 Hb_000318_130 Hb_000318_130 Hb_005282_020--Hb_000318_130 Hb_003878_080--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_003878_080--Hb_010757_030 Hb_024714_080 Hb_024714_080 Hb_003878_080--Hb_024714_080 Hb_000934_020 Hb_000934_020 Hb_003878_080--Hb_000934_020 Hb_003878_080--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.40581 6.85786 7.91375 8.49944 6.72747 5.91338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.79847 7.17829 9.7304 11.2534 37.5471

CAGE analysis