Hb_005511_150

Information

Type -
Description -
Location Contig5511: 130459-139255
Sequence    

Annotation

kegg
ID cvr:CHLNCDRAFT_34951
description hypothetical protein
nr
ID XP_011040978.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
swissprot
ID B1XWR5
description Probable protein kinase UbiB OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB PE=3 SV=1
trembl
ID A0A067DZM5
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0041461mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description uncharacterized aarf domain-containing protein kinase chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48280: 108832-137423 , PASA_asmbl_48282: 134741-134980 , PASA_asmbl_48283: 137434-139135 , PASA_asmbl_48284: 139139-139290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_150 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
2 Hb_009178_060 0.0534772815 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002374_250 0.0870685681 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001009_260 0.1076891914 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
5 Hb_000025_500 0.1079389965 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_013749_050 0.1089694967 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
7 Hb_002232_390 0.1113071677 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
8 Hb_030736_040 0.1117992033 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
9 Hb_001627_040 0.1118677 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
10 Hb_055690_010 0.1122772414 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
11 Hb_022092_030 0.1124078927 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
12 Hb_009778_060 0.1126719346 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
13 Hb_005914_040 0.1128682729 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
14 Hb_005305_020 0.1134625276 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
15 Hb_001449_070 0.1137030488 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004218_190 0.1138642625 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
17 Hb_002150_020 0.1149411157 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001214_050 0.1153890427 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
19 Hb_000484_010 0.1162438505 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
20 Hb_130589_010 0.1166017996 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_005511_150 Hb_005511_150 Hb_009178_060 Hb_009178_060 Hb_005511_150--Hb_009178_060 Hb_002374_250 Hb_002374_250 Hb_005511_150--Hb_002374_250 Hb_001009_260 Hb_001009_260 Hb_005511_150--Hb_001009_260 Hb_000025_500 Hb_000025_500 Hb_005511_150--Hb_000025_500 Hb_013749_050 Hb_013749_050 Hb_005511_150--Hb_013749_050 Hb_002232_390 Hb_002232_390 Hb_005511_150--Hb_002232_390 Hb_009178_060--Hb_002232_390 Hb_000803_320 Hb_000803_320 Hb_009178_060--Hb_000803_320 Hb_005914_040 Hb_005914_040 Hb_009178_060--Hb_005914_040 Hb_011364_020 Hb_011364_020 Hb_009178_060--Hb_011364_020 Hb_005250_010 Hb_005250_010 Hb_009178_060--Hb_005250_010 Hb_009778_060 Hb_009778_060 Hb_002374_250--Hb_009778_060 Hb_000676_200 Hb_000676_200 Hb_002374_250--Hb_000676_200 Hb_003089_020 Hb_003089_020 Hb_002374_250--Hb_003089_020 Hb_030131_030 Hb_030131_030 Hb_002374_250--Hb_030131_030 Hb_002374_250--Hb_009178_060 Hb_130589_010 Hb_130589_010 Hb_001009_260--Hb_130589_010 Hb_000120_860 Hb_000120_860 Hb_001009_260--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_004735_020 Hb_004735_020 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_000167_120 Hb_000167_120 Hb_000025_500--Hb_000167_120 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_004041_030 Hb_004041_030 Hb_000025_500--Hb_004041_030 Hb_068804_090 Hb_068804_090 Hb_013749_050--Hb_068804_090 Hb_002973_110 Hb_002973_110 Hb_013749_050--Hb_002973_110 Hb_004111_030 Hb_004111_030 Hb_013749_050--Hb_004111_030 Hb_030736_040 Hb_030736_040 Hb_013749_050--Hb_030736_040 Hb_000243_120 Hb_000243_120 Hb_013749_050--Hb_000243_120 Hb_000617_250 Hb_000617_250 Hb_013749_050--Hb_000617_250 Hb_000645_280 Hb_000645_280 Hb_002232_390--Hb_000645_280 Hb_003475_020 Hb_003475_020 Hb_002232_390--Hb_003475_020 Hb_000684_210 Hb_000684_210 Hb_002232_390--Hb_000684_210 Hb_007763_070 Hb_007763_070 Hb_002232_390--Hb_007763_070 Hb_001449_070 Hb_001449_070 Hb_002232_390--Hb_001449_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.925302 3.31957 3.02605 4.05073 1.47415 2.29479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70109 1.61455 3.12734 2.59063 9.02204

CAGE analysis