Hb_009178_060

Information

Type -
Description -
Location Contig9178: 36150-39691
Sequence    

Annotation

kegg
ID rcu:RCOM_0204870
description Protein ABC1, mitochondrial precursor, putative
nr
ID XP_012076326.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8RWG1
description Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=2 SV=1
trembl
ID A0A067KNP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07010 PE=4 SV=1
Gene Ontology
ID GO:0004672
description uncharacterized aarf domain-containing protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62304: 20499-37417 , PASA_asmbl_62305: 37534-39745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009178_060 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_005511_150 0.0534772815 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
3 Hb_002232_390 0.0744423811 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
4 Hb_000803_320 0.0821237731 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
5 Hb_005914_040 0.0828692678 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
6 Hb_011364_020 0.09373791 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
7 Hb_005250_010 0.0950776132 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
8 Hb_001627_040 0.0956384049 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
9 Hb_023988_030 0.0959552177 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
10 Hb_000270_390 0.0968372986 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
11 Hb_001029_040 0.0969503641 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
12 Hb_001998_150 0.0971204692 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
13 Hb_001421_090 0.0972908191 - - hypothetical protein RCOM_1278080 [Ricinus communis]
14 Hb_009288_020 0.0983737911 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
15 Hb_000445_090 0.0996350552 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
16 Hb_000538_280 0.1003345559 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
17 Hb_000465_280 0.1014937968 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
18 Hb_022092_030 0.1025659504 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
19 Hb_001214_050 0.1028625047 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
20 Hb_000484_010 0.1029473367 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]

Gene co-expression network

sample Hb_009178_060 Hb_009178_060 Hb_005511_150 Hb_005511_150 Hb_009178_060--Hb_005511_150 Hb_002232_390 Hb_002232_390 Hb_009178_060--Hb_002232_390 Hb_000803_320 Hb_000803_320 Hb_009178_060--Hb_000803_320 Hb_005914_040 Hb_005914_040 Hb_009178_060--Hb_005914_040 Hb_011364_020 Hb_011364_020 Hb_009178_060--Hb_011364_020 Hb_005250_010 Hb_005250_010 Hb_009178_060--Hb_005250_010 Hb_002374_250 Hb_002374_250 Hb_005511_150--Hb_002374_250 Hb_001009_260 Hb_001009_260 Hb_005511_150--Hb_001009_260 Hb_000025_500 Hb_000025_500 Hb_005511_150--Hb_000025_500 Hb_013749_050 Hb_013749_050 Hb_005511_150--Hb_013749_050 Hb_005511_150--Hb_002232_390 Hb_000645_280 Hb_000645_280 Hb_002232_390--Hb_000645_280 Hb_003475_020 Hb_003475_020 Hb_002232_390--Hb_003475_020 Hb_000684_210 Hb_000684_210 Hb_002232_390--Hb_000684_210 Hb_007763_070 Hb_007763_070 Hb_002232_390--Hb_007763_070 Hb_001449_070 Hb_001449_070 Hb_002232_390--Hb_001449_070 Hb_002874_110 Hb_002874_110 Hb_000803_320--Hb_002874_110 Hb_000270_390 Hb_000270_390 Hb_000803_320--Hb_000270_390 Hb_009288_020 Hb_009288_020 Hb_000803_320--Hb_009288_020 Hb_000504_180 Hb_000504_180 Hb_000803_320--Hb_000504_180 Hb_006663_060 Hb_006663_060 Hb_000803_320--Hb_006663_060 Hb_005571_010 Hb_005571_010 Hb_005914_040--Hb_005571_010 Hb_006846_080 Hb_006846_080 Hb_005914_040--Hb_006846_080 Hb_023988_030 Hb_023988_030 Hb_005914_040--Hb_023988_030 Hb_005914_040--Hb_005250_010 Hb_000862_100 Hb_000862_100 Hb_005914_040--Hb_000862_100 Hb_011364_020--Hb_023988_030 Hb_011364_020--Hb_005571_010 Hb_001421_090 Hb_001421_090 Hb_011364_020--Hb_001421_090 Hb_001105_100 Hb_001105_100 Hb_011364_020--Hb_001105_100 Hb_030959_010 Hb_030959_010 Hb_011364_020--Hb_030959_010 Hb_013405_080 Hb_013405_080 Hb_005250_010--Hb_013405_080 Hb_025477_050 Hb_025477_050 Hb_005250_010--Hb_025477_050 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.19418 11.3698 8.9971 14.4953 6.66623 7.85058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.92669 6.38997 8.47052 9.21543 28.5333

CAGE analysis