Hb_023988_030

Information

Type -
Description -
Location Contig23988: 36688-39635
Sequence    

Annotation

kegg
ID vvi:100242201
description transmembrane protein 19
nr
ID XP_002284876.1
description PREDICTED: transmembrane protein 19 [Vitis vinifera]
swissprot
ID Q5RF73
description Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1
trembl
ID D7TBU4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04520 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25105: 36734-39701
cDNA
(Sanger)
(ID:Location)		 012_E16.ab1: 36734-38977

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023988_030 0.0 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
2 Hb_005571_010 0.0566097604 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
3 Hb_005914_040 0.0823658747 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
4 Hb_055690_010 0.0870045786 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
5 Hb_106890_010 0.0873318438 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
6 Hb_001677_220 0.0907129434 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
7 Hb_011364_020 0.09256116 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
8 Hb_007741_120 0.0933583597 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
9 Hb_003355_010 0.0952029732 - - Heat shock 70 kDa protein, putative [Ricinus communis]
10 Hb_003106_190 0.0957026929 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
11 Hb_009178_060 0.0959552177 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_134849_010 0.0972137123 - - ATP synthase subunit d, putative [Ricinus communis]
13 Hb_008705_020 0.0987830204 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
14 Hb_002150_020 0.100408943 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000062_510 0.1017531419 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
16 Hb_000803_320 0.1023944738 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
17 Hb_005250_010 0.1034144551 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
18 Hb_003142_010 0.1034828089 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
19 Hb_001009_260 0.1036857312 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
20 Hb_030736_040 0.1036879596 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023988_030 Hb_023988_030 Hb_005571_010 Hb_005571_010 Hb_023988_030--Hb_005571_010 Hb_005914_040 Hb_005914_040 Hb_023988_030--Hb_005914_040 Hb_055690_010 Hb_055690_010 Hb_023988_030--Hb_055690_010 Hb_106890_010 Hb_106890_010 Hb_023988_030--Hb_106890_010 Hb_001677_220 Hb_001677_220 Hb_023988_030--Hb_001677_220 Hb_011364_020 Hb_011364_020 Hb_023988_030--Hb_011364_020 Hb_002150_020 Hb_002150_020 Hb_005571_010--Hb_002150_020 Hb_005571_010--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_005571_010--Hb_003355_010 Hb_005571_010--Hb_005914_040 Hb_005571_010--Hb_055690_010 Hb_006846_080 Hb_006846_080 Hb_005914_040--Hb_006846_080 Hb_009178_060 Hb_009178_060 Hb_005914_040--Hb_009178_060 Hb_005250_010 Hb_005250_010 Hb_005914_040--Hb_005250_010 Hb_000862_100 Hb_000862_100 Hb_005914_040--Hb_000862_100 Hb_000585_110 Hb_000585_110 Hb_055690_010--Hb_000585_110 Hb_030736_040 Hb_030736_040 Hb_055690_010--Hb_030736_040 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_055690_010--Hb_002150_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010 Hb_106890_010--Hb_003355_010 Hb_106890_010--Hb_030736_040 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020 Hb_003142_010 Hb_003142_010 Hb_001677_220--Hb_003142_010 Hb_000032_500 Hb_000032_500 Hb_001677_220--Hb_000032_500 Hb_000189_450 Hb_000189_450 Hb_001677_220--Hb_000189_450 Hb_000008_350 Hb_000008_350 Hb_001677_220--Hb_000008_350 Hb_003124_120 Hb_003124_120 Hb_001677_220--Hb_003124_120 Hb_000816_200 Hb_000816_200 Hb_001677_220--Hb_000816_200 Hb_011364_020--Hb_009178_060 Hb_011364_020--Hb_005571_010 Hb_001421_090 Hb_001421_090 Hb_011364_020--Hb_001421_090 Hb_001105_100 Hb_001105_100 Hb_011364_020--Hb_001105_100 Hb_030959_010 Hb_030959_010 Hb_011364_020--Hb_030959_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.11502 7.24538 10.5923 15.3579 7.25451 6.36558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67458 6.61129 5.33466 13.3992 28.3941

CAGE analysis