Hb_000008_350

Information

Type -
Description -
Location Contig8: 435846-437327
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_350 0.0 - - -
2 Hb_001677_220 0.080611883 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
3 Hb_008375_010 0.0891740716 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
4 Hb_004339_030 0.0969368124 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
5 Hb_008147_080 0.0984917214 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
6 Hb_000816_200 0.1080427441 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
7 Hb_003124_120 0.1104725835 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
8 Hb_000032_500 0.1111125221 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
9 Hb_003581_290 0.1128498273 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
10 Hb_003142_010 0.1132991823 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
11 Hb_000189_450 0.1144134848 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
12 Hb_007441_310 0.1176043581 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
13 Hb_010288_060 0.1187337804 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
14 Hb_023988_030 0.1194162152 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
15 Hb_055690_010 0.1194523031 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
16 Hb_000739_210 0.1197447228 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
17 Hb_001105_040 0.1197805584 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000914_100 0.1203425416 - - unknown [Glycine max]
19 Hb_029920_030 0.1223937674 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
20 Hb_016219_030 0.1226096184 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000008_350 Hb_000008_350 Hb_001677_220 Hb_001677_220 Hb_000008_350--Hb_001677_220 Hb_008375_010 Hb_008375_010 Hb_000008_350--Hb_008375_010 Hb_004339_030 Hb_004339_030 Hb_000008_350--Hb_004339_030 Hb_008147_080 Hb_008147_080 Hb_000008_350--Hb_008147_080 Hb_000816_200 Hb_000816_200 Hb_000008_350--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000008_350--Hb_003124_120 Hb_003142_010 Hb_003142_010 Hb_001677_220--Hb_003142_010 Hb_000032_500 Hb_000032_500 Hb_001677_220--Hb_000032_500 Hb_000189_450 Hb_000189_450 Hb_001677_220--Hb_000189_450 Hb_001677_220--Hb_003124_120 Hb_001677_220--Hb_000816_200 Hb_007441_310 Hb_007441_310 Hb_008375_010--Hb_007441_310 Hb_055690_010 Hb_055690_010 Hb_008375_010--Hb_055690_010 Hb_000585_110 Hb_000585_110 Hb_008375_010--Hb_000585_110 Hb_008375_010--Hb_008147_080 Hb_002075_030 Hb_002075_030 Hb_008375_010--Hb_002075_030 Hb_003581_290 Hb_003581_290 Hb_004339_030--Hb_003581_290 Hb_010288_060 Hb_010288_060 Hb_004339_030--Hb_010288_060 Hb_004339_030--Hb_008147_080 Hb_000739_210 Hb_000739_210 Hb_004339_030--Hb_000739_210 Hb_004339_030--Hb_008375_010 Hb_004644_030 Hb_004644_030 Hb_008147_080--Hb_004644_030 Hb_005218_080 Hb_005218_080 Hb_008147_080--Hb_005218_080 Hb_001578_020 Hb_001578_020 Hb_008147_080--Hb_001578_020 Hb_000388_060 Hb_000388_060 Hb_008147_080--Hb_000388_060 Hb_000077_150 Hb_000077_150 Hb_008147_080--Hb_000077_150 Hb_016461_030 Hb_016461_030 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000816_200--Hb_000189_450 Hb_000816_200--Hb_007441_310 Hb_010128_020 Hb_010128_020 Hb_003124_120--Hb_010128_020 Hb_003124_120--Hb_016461_030 Hb_000983_070 Hb_000983_070 Hb_003124_120--Hb_000983_070 Hb_003124_120--Hb_002075_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47559 4.73254 11.7681 12.8794 4.30332 5.04589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5381 4.84665 4.71934 12.5872 29.8551

CAGE analysis