Hb_004339_030

Information

Type -
Description -
Location Contig4339: 29278-31318
Sequence    

Annotation

kegg
ID cic:CICLE_v10015763mg
description hypothetical protein
nr
ID XP_012072020.1
description PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
swissprot
ID Q7ZWS2
description 7-methylguanosine phosphate-specific 5'-nucleotidase A OS=Xenopus laevis GN=Nt5c3b-a PE=2 SV=2
trembl
ID A0A067L1G3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05755 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cytosolic 5 -nucleotidase 3 isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42404: 29283-46028
cDNA
(Sanger)
(ID:Location)		 049_N16.ab1: 29283-43734

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004339_030 0.0 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
2 Hb_003581_290 0.0691998568 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
3 Hb_010288_060 0.0893531606 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
4 Hb_008147_080 0.0963030585 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
5 Hb_000008_350 0.0969368124 - - -
6 Hb_000739_210 0.1223779883 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
7 Hb_008375_010 0.1297656313 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
8 Hb_004644_030 0.1312226443 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
9 Hb_000914_100 0.1381231946 - - unknown [Glycine max]
10 Hb_006277_010 0.1405840101 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
11 Hb_000077_150 0.141242958 - - PREDICTED: riboflavin synthase [Jatropha curcas]
12 Hb_029920_030 0.1412743912 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
13 Hb_001138_060 0.1435928392 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
14 Hb_000062_510 0.1437817246 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
15 Hb_000816_200 0.1439008231 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
16 Hb_003124_120 0.144414269 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
17 Hb_003106_190 0.1446605635 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
18 Hb_000896_050 0.1462548922 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
19 Hb_000058_080 0.1496097895 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_003544_010 0.1503331613 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004339_030 Hb_004339_030 Hb_003581_290 Hb_003581_290 Hb_004339_030--Hb_003581_290 Hb_010288_060 Hb_010288_060 Hb_004339_030--Hb_010288_060 Hb_008147_080 Hb_008147_080 Hb_004339_030--Hb_008147_080 Hb_000008_350 Hb_000008_350 Hb_004339_030--Hb_000008_350 Hb_000739_210 Hb_000739_210 Hb_004339_030--Hb_000739_210 Hb_008375_010 Hb_008375_010 Hb_004339_030--Hb_008375_010 Hb_029920_030 Hb_029920_030 Hb_003581_290--Hb_029920_030 Hb_000816_200 Hb_000816_200 Hb_003581_290--Hb_000816_200 Hb_003581_290--Hb_008147_080 Hb_003581_290--Hb_000008_350 Hb_000058_080 Hb_000058_080 Hb_003581_290--Hb_000058_080 Hb_010288_060--Hb_008147_080 Hb_010288_060--Hb_000008_350 Hb_000390_030 Hb_000390_030 Hb_010288_060--Hb_000390_030 Hb_010288_060--Hb_000739_210 Hb_010288_060--Hb_003581_290 Hb_004644_030 Hb_004644_030 Hb_008147_080--Hb_004644_030 Hb_005218_080 Hb_005218_080 Hb_008147_080--Hb_005218_080 Hb_008147_080--Hb_008375_010 Hb_001578_020 Hb_001578_020 Hb_008147_080--Hb_001578_020 Hb_000388_060 Hb_000388_060 Hb_008147_080--Hb_000388_060 Hb_000077_150 Hb_000077_150 Hb_008147_080--Hb_000077_150 Hb_001677_220 Hb_001677_220 Hb_000008_350--Hb_001677_220 Hb_000008_350--Hb_008375_010 Hb_000008_350--Hb_008147_080 Hb_000008_350--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000008_350--Hb_003124_120 Hb_000256_110 Hb_000256_110 Hb_000739_210--Hb_000256_110 Hb_000896_050 Hb_000896_050 Hb_000739_210--Hb_000896_050 Hb_000739_210--Hb_000008_350 Hb_000062_510 Hb_000062_510 Hb_000739_210--Hb_000062_510 Hb_007441_310 Hb_007441_310 Hb_008375_010--Hb_007441_310 Hb_055690_010 Hb_055690_010 Hb_008375_010--Hb_055690_010 Hb_000585_110 Hb_000585_110 Hb_008375_010--Hb_000585_110 Hb_002075_030 Hb_002075_030 Hb_008375_010--Hb_002075_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.583754 0.602237 2.47322 3.45675 1.06505 1.38264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70864 1.47064 2.39238 3.81344 8.37537

CAGE analysis