Hb_001677_220

Information

Type -
Description -
Location Contig1677: 210079-224566
Sequence    

Annotation

kegg
ID rcu:RCOM_1482420
description folylpolyglutamate synthase, putative (EC:6.3.2.17)
nr
ID XP_012088466.1
description PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
swissprot
ID F4K2A1
description Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS1 PE=1 SV=1
trembl
ID A0A067L8Z1
description Folylpolyglutamate synthase OS=Jatropha curcas GN=JCGZ_01372 PE=3 SV=1
Gene Ontology
ID GO:0004326
description folylpolyglutamate synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15575: 219115-223108 , PASA_asmbl_15576: 222779-223099 , PASA_asmbl_15577: 222784-222980 , PASA_asmbl_15578: 223118-224761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_220 0.0 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
2 Hb_003142_010 0.0556616955 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
3 Hb_000032_500 0.0697411449 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
4 Hb_000189_450 0.0727834423 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
5 Hb_000008_350 0.080611883 - - -
6 Hb_003124_120 0.083762051 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
7 Hb_000816_200 0.085105545 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
8 Hb_023988_030 0.0907129434 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
9 Hb_000617_250 0.0934491735 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
10 Hb_016461_030 0.0941371121 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_002150_020 0.0951385983 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_001214_050 0.0975639247 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
13 Hb_001009_260 0.0977163064 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
14 Hb_000200_010 0.0979719809 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
15 Hb_055690_010 0.0990166968 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
16 Hb_008375_010 0.1003225112 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
17 Hb_001080_070 0.1004239231 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
18 Hb_005571_010 0.1005983769 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
19 Hb_002542_160 0.1034986756 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
20 Hb_001195_770 0.1042586688 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]

Gene co-expression network

sample Hb_001677_220 Hb_001677_220 Hb_003142_010 Hb_003142_010 Hb_001677_220--Hb_003142_010 Hb_000032_500 Hb_000032_500 Hb_001677_220--Hb_000032_500 Hb_000189_450 Hb_000189_450 Hb_001677_220--Hb_000189_450 Hb_000008_350 Hb_000008_350 Hb_001677_220--Hb_000008_350 Hb_003124_120 Hb_003124_120 Hb_001677_220--Hb_003124_120 Hb_000816_200 Hb_000816_200 Hb_001677_220--Hb_000816_200 Hb_003142_010--Hb_000189_450 Hb_001080_070 Hb_001080_070 Hb_003142_010--Hb_001080_070 Hb_000200_010 Hb_000200_010 Hb_003142_010--Hb_000200_010 Hb_001009_260 Hb_001009_260 Hb_003142_010--Hb_001009_260 Hb_000617_250 Hb_000617_250 Hb_003142_010--Hb_000617_250 Hb_134849_010 Hb_134849_010 Hb_000032_500--Hb_134849_010 Hb_001105_040 Hb_001105_040 Hb_000032_500--Hb_001105_040 Hb_000941_100 Hb_000941_100 Hb_000032_500--Hb_000941_100 Hb_000032_500--Hb_000200_010 Hb_008705_020 Hb_008705_020 Hb_000032_500--Hb_008705_020 Hb_000189_450--Hb_000816_200 Hb_016219_030 Hb_016219_030 Hb_000189_450--Hb_016219_030 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_008375_010 Hb_008375_010 Hb_000008_350--Hb_008375_010 Hb_004339_030 Hb_004339_030 Hb_000008_350--Hb_004339_030 Hb_008147_080 Hb_008147_080 Hb_000008_350--Hb_008147_080 Hb_000008_350--Hb_000816_200 Hb_000008_350--Hb_003124_120 Hb_003124_120--Hb_000816_200 Hb_010128_020 Hb_010128_020 Hb_003124_120--Hb_010128_020 Hb_016461_030 Hb_016461_030 Hb_003124_120--Hb_016461_030 Hb_000983_070 Hb_000983_070 Hb_003124_120--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_003124_120--Hb_002075_030 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9663 6.31354 10.1784 10.3227 4.24844 4.88884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.81792 5.68347 3.37442 8.74615 27.9239

CAGE analysis