Hb_000189_450

Information

Type -
Description -
Location Contig189: 368974-378622
Sequence    

Annotation

kegg
ID rcu:RCOM_1428040
description Zeta-carotene desaturase, chloroplast precursor, putative (EC:1.14.99.30)
nr
ID XP_002512239.1
description Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID O49901
description Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1
trembl
ID B9RES0
description Zeta-carotene desaturase, chloroplast, putative OS=Ricinus communis GN=RCOM_1428040 PE=4 SV=1
Gene Ontology
ID GO:0009509
description zeta-carotene desaturase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18697: 369169-378500 , PASA_asmbl_18699: 373784-378280
cDNA
(Sanger)
(ID:Location)		 037_M18r.ab1: 366330-368213

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_450 0.0 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
2 Hb_001677_220 0.0727834423 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
3 Hb_000816_200 0.073528361 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
4 Hb_016219_030 0.0748377267 - - cytochrome P450, putative [Ricinus communis]
5 Hb_003142_010 0.0822954023 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
6 Hb_001080_070 0.085065257 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
7 Hb_000114_150 0.0896223815 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
8 Hb_001449_070 0.0918153769 - - conserved hypothetical protein [Ricinus communis]
9 Hb_016461_030 0.0932768744 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000032_500 0.0947355954 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
11 Hb_001898_180 0.0965473728 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
12 Hb_000200_010 0.1059305389 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
13 Hb_009767_130 0.1076572938 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
14 Hb_008375_010 0.1077514729 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
15 Hb_007054_070 0.1082164851 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
16 Hb_000983_070 0.1082580344 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007441_310 0.1086570264 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
18 Hb_004644_030 0.109363568 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
19 Hb_003124_120 0.1101126827 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
20 Hb_001214_050 0.111368622 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000189_450 Hb_000189_450 Hb_001677_220 Hb_001677_220 Hb_000189_450--Hb_001677_220 Hb_000816_200 Hb_000816_200 Hb_000189_450--Hb_000816_200 Hb_016219_030 Hb_016219_030 Hb_000189_450--Hb_016219_030 Hb_003142_010 Hb_003142_010 Hb_000189_450--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_001677_220--Hb_003142_010 Hb_000032_500 Hb_000032_500 Hb_001677_220--Hb_000032_500 Hb_000008_350 Hb_000008_350 Hb_001677_220--Hb_000008_350 Hb_003124_120 Hb_003124_120 Hb_001677_220--Hb_003124_120 Hb_001677_220--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310 Hb_000438_140 Hb_000438_140 Hb_016219_030--Hb_000438_140 Hb_002053_010 Hb_002053_010 Hb_016219_030--Hb_002053_010 Hb_001789_200 Hb_001789_200 Hb_016219_030--Hb_001789_200 Hb_016219_030--Hb_000032_500 Hb_001105_040 Hb_001105_040 Hb_016219_030--Hb_001105_040 Hb_003142_010--Hb_001080_070 Hb_000200_010 Hb_000200_010 Hb_003142_010--Hb_000200_010 Hb_001009_260 Hb_001009_260 Hb_003142_010--Hb_001009_260 Hb_000617_250 Hb_000617_250 Hb_003142_010--Hb_000617_250 Hb_000345_370 Hb_000345_370 Hb_001080_070--Hb_000345_370 Hb_000648_040 Hb_000648_040 Hb_001080_070--Hb_000648_040 Hb_001080_070--Hb_016461_030 Hb_001080_070--Hb_001677_220 Hb_000114_150--Hb_000816_200 Hb_000107_590 Hb_000107_590 Hb_000114_150--Hb_000107_590 Hb_000397_150 Hb_000397_150 Hb_000114_150--Hb_000397_150 Hb_000114_150--Hb_007441_310 Hb_000983_070 Hb_000983_070 Hb_000114_150--Hb_000983_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95434 3.70783 8.30606 10.1391 2.71144 5.23155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42851 6.56239 2.88579 5.9598 24.5857

CAGE analysis