Hb_000107_590

Information

Type -
Description -
Location Contig107: 448163-468806
Sequence    

Annotation

kegg
ID rcu:RCOM_1385680
description hypothetical protein
nr
ID XP_012072681.1
description PREDICTED: tricalbin-3 [Jatropha curcas]
swissprot
ID Q9UT00
description Uncharacterized protein PYUK71.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPYUK71.03c PE=1 SV=1
trembl
ID B9S3N3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1385680 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tricalbin-3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02214: 448151-453867 , PASA_asmbl_02215: 450565-450927 , PASA_asmbl_02216: 465269-465557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_590 0.0 - - PREDICTED: tricalbin-3 [Jatropha curcas]
2 Hb_000114_150 0.0845703687 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
3 Hb_000816_200 0.1034760662 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
4 Hb_001628_120 0.1061931624 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
5 Hb_007441_310 0.1070313009 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
6 Hb_002305_010 0.1085068594 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
7 Hb_000866_050 0.1124932928 - - phosphate transporter [Manihot esculenta]
8 Hb_000189_450 0.1133168307 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
9 Hb_000397_150 0.1190249184 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
10 Hb_000951_120 0.1193644915 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
11 Hb_001789_200 0.1205137596 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
12 Hb_130589_010 0.126019484 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_008375_010 0.1264092551 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
14 Hb_003642_010 0.1280127464 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_032631_070 0.1286125519 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
16 Hb_000352_220 0.1287674675 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_001009_260 0.1296312019 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
18 Hb_000300_020 0.1304749683 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
19 Hb_009687_020 0.13072737 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
20 Hb_011053_030 0.1329165241 - - -

Gene co-expression network

sample Hb_000107_590 Hb_000107_590 Hb_000114_150 Hb_000114_150 Hb_000107_590--Hb_000114_150 Hb_000816_200 Hb_000816_200 Hb_000107_590--Hb_000816_200 Hb_001628_120 Hb_001628_120 Hb_000107_590--Hb_001628_120 Hb_007441_310 Hb_007441_310 Hb_000107_590--Hb_007441_310 Hb_002305_010 Hb_002305_010 Hb_000107_590--Hb_002305_010 Hb_000866_050 Hb_000866_050 Hb_000107_590--Hb_000866_050 Hb_000114_150--Hb_000816_200 Hb_000397_150 Hb_000397_150 Hb_000114_150--Hb_000397_150 Hb_000189_450 Hb_000189_450 Hb_000114_150--Hb_000189_450 Hb_000114_150--Hb_007441_310 Hb_000983_070 Hb_000983_070 Hb_000114_150--Hb_000983_070 Hb_016461_030 Hb_016461_030 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000816_200--Hb_000189_450 Hb_000816_200--Hb_007441_310 Hb_001976_030 Hb_001976_030 Hb_001628_120--Hb_001976_030 Hb_000684_390 Hb_000684_390 Hb_001628_120--Hb_000684_390 Hb_042083_040 Hb_042083_040 Hb_001628_120--Hb_042083_040 Hb_000049_180 Hb_000049_180 Hb_001628_120--Hb_000049_180 Hb_001628_120--Hb_007441_310 Hb_001628_120--Hb_000397_150 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_032631_070 Hb_032631_070 Hb_007441_310--Hb_032631_070 Hb_000585_110 Hb_000585_110 Hb_007441_310--Hb_000585_110 Hb_007441_310--Hb_000397_150 Hb_055690_010 Hb_055690_010 Hb_007441_310--Hb_055690_010 Hb_007441_310--Hb_001195_770 Hb_000951_120 Hb_000951_120 Hb_002305_010--Hb_000951_120 Hb_000805_010 Hb_000805_010 Hb_002305_010--Hb_000805_010 Hb_000210_080 Hb_000210_080 Hb_002305_010--Hb_000210_080 Hb_000984_210 Hb_000984_210 Hb_002305_010--Hb_000984_210 Hb_002374_450 Hb_002374_450 Hb_002305_010--Hb_002374_450 Hb_000058_080 Hb_000058_080 Hb_000866_050--Hb_000058_080 Hb_000189_520 Hb_000189_520 Hb_000866_050--Hb_000189_520 Hb_003935_080 Hb_003935_080 Hb_000866_050--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000866_050--Hb_011053_030 Hb_183963_010 Hb_183963_010 Hb_000866_050--Hb_183963_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.493758 0.357373 1.628 1.93212 0.138208 0.592737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.753226 0.680996 0.57802 0.775737 4.18991

CAGE analysis