Hb_000210_080

Information

Type -
Description -
Location Contig210: 134628-138028
Sequence    

Annotation

kegg
ID rcu:RCOM_0225410
description peroxiredoxins, prx-1, prx-2, prx-3, putative (EC:1.11.1.15)
nr
ID XP_012074345.1
description PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9C5R8
description 2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=3
trembl
ID A0A067KWB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08778 PE=4 SV=1
Gene Ontology
ID GO:0004601
description 2-cys peroxiredoxin chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21732: 133252-134379 , PASA_asmbl_21733: 134537-137944 , PASA_asmbl_21734: 134585-137944
cDNA
(Sanger)
(ID:Location)		 004_A04.ab1: 134585-137721 , 008_F02.ab1: 134558-137650 , 023_L22.ab1: 134537-137428 , 026_E18.ab1: 134585-137463 , 028_A03.ab1: 134537-137428 , 028_I01.ab1: 134537-137650 , 028_L18.ab1: 134558-137463 , 030_C21.ab1: 134537-136873 , 040_J01.ab1: 134537-137644 , 048_D23.ab1: 134557-137657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_080 0.0 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
2 Hb_000395_010 0.0984967608 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
3 Hb_158092_100 0.117136262 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
4 Hb_002529_090 0.1219289974 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
5 Hb_000388_060 0.1234065777 - - fructokinase [Manihot esculenta]
6 Hb_003680_090 0.1276027017 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
7 Hb_004348_040 0.1276626349 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
8 Hb_004162_270 0.1287425946 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000175_050 0.1305416291 - - -
10 Hb_000130_200 0.1318796368 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
11 Hb_000070_110 0.1337166865 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
12 Hb_032631_070 0.1337586361 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
13 Hb_000594_100 0.1353691421 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
14 Hb_002305_010 0.1360472808 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
15 Hb_008375_010 0.1373716248 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
16 Hb_000046_480 0.1376652508 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
17 Hb_033152_110 0.1385277753 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
18 Hb_002075_030 0.1392441789 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
19 Hb_003053_070 0.1402284564 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
20 Hb_000820_140 0.1408927937 - - histone H4 [Zea mays]

Gene co-expression network

sample Hb_000210_080 Hb_000210_080 Hb_000395_010 Hb_000395_010 Hb_000210_080--Hb_000395_010 Hb_158092_100 Hb_158092_100 Hb_000210_080--Hb_158092_100 Hb_002529_090 Hb_002529_090 Hb_000210_080--Hb_002529_090 Hb_000388_060 Hb_000388_060 Hb_000210_080--Hb_000388_060 Hb_003680_090 Hb_003680_090 Hb_000210_080--Hb_003680_090 Hb_004348_040 Hb_004348_040 Hb_000210_080--Hb_004348_040 Hb_000684_200 Hb_000684_200 Hb_000395_010--Hb_000684_200 Hb_004837_100 Hb_004837_100 Hb_000395_010--Hb_004837_100 Hb_004162_270 Hb_004162_270 Hb_000395_010--Hb_004162_270 Hb_000805_010 Hb_000805_010 Hb_000395_010--Hb_000805_010 Hb_000395_010--Hb_158092_100 Hb_002044_160 Hb_002044_160 Hb_158092_100--Hb_002044_160 Hb_009687_020 Hb_009687_020 Hb_158092_100--Hb_009687_020 Hb_006420_010 Hb_006420_010 Hb_158092_100--Hb_006420_010 Hb_007904_060 Hb_007904_060 Hb_158092_100--Hb_007904_060 Hb_000473_050 Hb_000473_050 Hb_158092_100--Hb_000473_050 Hb_004055_160 Hb_004055_160 Hb_158092_100--Hb_004055_160 Hb_000070_110 Hb_000070_110 Hb_002529_090--Hb_000070_110 Hb_000560_040 Hb_000560_040 Hb_002529_090--Hb_000560_040 Hb_003440_020 Hb_003440_020 Hb_002529_090--Hb_003440_020 Hb_002529_090--Hb_004348_040 Hb_000130_200 Hb_000130_200 Hb_002529_090--Hb_000130_200 Hb_002232_160 Hb_002232_160 Hb_002529_090--Hb_002232_160 Hb_001789_200 Hb_001789_200 Hb_000388_060--Hb_001789_200 Hb_002053_010 Hb_002053_010 Hb_000388_060--Hb_002053_010 Hb_008147_080 Hb_008147_080 Hb_000388_060--Hb_008147_080 Hb_000983_070 Hb_000983_070 Hb_000388_060--Hb_000983_070 Hb_001124_180 Hb_001124_180 Hb_000388_060--Hb_001124_180 Hb_001898_180 Hb_001898_180 Hb_000388_060--Hb_001898_180 Hb_005917_020 Hb_005917_020 Hb_003680_090--Hb_005917_020 Hb_000270_280 Hb_000270_280 Hb_003680_090--Hb_000270_280 Hb_002811_310 Hb_002811_310 Hb_003680_090--Hb_002811_310 Hb_003680_090--Hb_004162_270 Hb_001863_180 Hb_001863_180 Hb_003680_090--Hb_001863_180 Hb_003053_070 Hb_003053_070 Hb_003680_090--Hb_003053_070 Hb_000890_080 Hb_000890_080 Hb_004348_040--Hb_000890_080 Hb_004348_040--Hb_003440_020 Hb_004348_040--Hb_000388_060 Hb_007441_310 Hb_007441_310 Hb_004348_040--Hb_007441_310 Hb_000820_140 Hb_000820_140 Hb_004348_040--Hb_000820_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2815 24.8105 167.902 114.135 9.36594 16.4212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.0711 44.0591 34.1775 95.3223 274.633

CAGE analysis