Hb_006420_010

Information

Type -
Description -
Location Contig6420: 10259-15701
Sequence    

Annotation

kegg
ID rcu:RCOM_0699470
description hypothetical protein
nr
ID XP_012092000.1
description PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21742 PE=4 SV=1
Gene Ontology
ID GO:0009507
description cofactor assembly of complex c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52190: 10434-10940 , PASA_asmbl_52191: 10423-10940 , PASA_asmbl_52192: 11785-15632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006420_010 0.0 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
2 Hb_158092_100 0.0834902613 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
3 Hb_007904_060 0.0908413739 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
4 Hb_000264_280 0.1068655649 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
5 Hb_000108_150 0.1087088807 - - alpha/beta hydrolase, putative [Ricinus communis]
6 Hb_000061_250 0.1114136125 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
7 Hb_004162_270 0.1136657904 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
8 Hb_004055_160 0.1212155927 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
9 Hb_000684_200 0.1218092585 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_002411_100 0.122089441 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
11 Hb_005784_030 0.1234616718 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
12 Hb_126917_010 0.1257803577 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
13 Hb_009687_020 0.1264139472 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
14 Hb_000352_280 0.1277172913 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
15 Hb_005116_100 0.1278728903 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
16 Hb_006829_080 0.1291673145 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
17 Hb_002044_160 0.1298641541 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
18 Hb_032631_030 0.1300943882 - - phosphatidic acid phosphatase, putative [Ricinus communis]
19 Hb_003948_020 0.1306849429 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
20 Hb_010557_010 0.1319208287 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006420_010 Hb_006420_010 Hb_158092_100 Hb_158092_100 Hb_006420_010--Hb_158092_100 Hb_007904_060 Hb_007904_060 Hb_006420_010--Hb_007904_060 Hb_000264_280 Hb_000264_280 Hb_006420_010--Hb_000264_280 Hb_000108_150 Hb_000108_150 Hb_006420_010--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_006420_010--Hb_000061_250 Hb_004162_270 Hb_004162_270 Hb_006420_010--Hb_004162_270 Hb_002044_160 Hb_002044_160 Hb_158092_100--Hb_002044_160 Hb_009687_020 Hb_009687_020 Hb_158092_100--Hb_009687_020 Hb_158092_100--Hb_007904_060 Hb_000473_050 Hb_000473_050 Hb_158092_100--Hb_000473_050 Hb_004055_160 Hb_004055_160 Hb_158092_100--Hb_004055_160 Hb_005784_030 Hb_005784_030 Hb_007904_060--Hb_005784_030 Hb_007904_060--Hb_000108_150 Hb_003020_250 Hb_003020_250 Hb_007904_060--Hb_003020_250 Hb_003752_090 Hb_003752_090 Hb_007904_060--Hb_003752_090 Hb_003664_030 Hb_003664_030 Hb_000264_280--Hb_003664_030 Hb_000264_280--Hb_000108_150 Hb_000264_280--Hb_000061_250 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_003948_020 Hb_003948_020 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_000061_250--Hb_000045_050 Hb_000544_080 Hb_000544_080 Hb_000061_250--Hb_000544_080 Hb_000061_250--Hb_003948_020 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_000684_200 Hb_000684_200 Hb_004162_270--Hb_000684_200 Hb_000270_280 Hb_000270_280 Hb_004162_270--Hb_000270_280 Hb_003680_090 Hb_003680_090 Hb_004162_270--Hb_003680_090 Hb_003053_070 Hb_003053_070 Hb_004162_270--Hb_003053_070 Hb_000395_010 Hb_000395_010 Hb_004162_270--Hb_000395_010 Hb_004162_270--Hb_005784_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.156697 0.35098 3.15158 1.83616 0.419439 0.218418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.414455 0.652062 0.110612 0.782759 4.43123

CAGE analysis