Hb_003664_030

Information

Type -
Description -
Location Contig3664: 24311-27684
Sequence    

Annotation

kegg
ID rcu:RCOM_0864750
description Protein dif-1, putative
nr
ID XP_012076240.1
description PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
swissprot
ID Q93XM7
description Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=2 SV=1
trembl
ID A0A067KDN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12674 PE=3 SV=1
Gene Ontology
ID GO:0009507
description mitochondrial carnitine acylcarnitine carrier-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37701: 24130-27602 , PASA_asmbl_37702: 24130-27724
cDNA
(Sanger)
(ID:Location)		 048_H23.ab1: 24364-26533

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003664_030 0.0 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
2 Hb_000264_280 0.085027075 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
3 Hb_003948_020 0.0881753439 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
4 Hb_005784_030 0.0912703427 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
5 Hb_148146_010 0.0958836062 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
6 Hb_003752_090 0.1047443268 - - chitinase, putative [Ricinus communis]
7 Hb_000834_060 0.1073418922 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001649_030 0.1082597957 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
9 Hb_004223_270 0.1104847103 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
10 Hb_005074_050 0.1112641571 - - PREDICTED: myosin-6-like [Jatropha curcas]
11 Hb_000402_020 0.1121344057 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_003020_250 0.1136241807 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
13 Hb_000327_200 0.1153602864 - - glutathione-s-transferase omega, putative [Ricinus communis]
14 Hb_000368_120 0.116472769 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
15 Hb_002411_100 0.1166936385 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
16 Hb_000061_250 0.1177688524 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
17 Hb_000099_170 0.1185019239 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
18 Hb_005333_200 0.1185237623 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
19 Hb_005181_120 0.1190048925 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000011_560 0.1195169903 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003664_030 Hb_003664_030 Hb_000264_280 Hb_000264_280 Hb_003664_030--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_003664_030--Hb_003948_020 Hb_005784_030 Hb_005784_030 Hb_003664_030--Hb_005784_030 Hb_148146_010 Hb_148146_010 Hb_003664_030--Hb_148146_010 Hb_003752_090 Hb_003752_090 Hb_003664_030--Hb_003752_090 Hb_000834_060 Hb_000834_060 Hb_003664_030--Hb_000834_060 Hb_000108_150 Hb_000108_150 Hb_000264_280--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_000264_280--Hb_000061_250 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_002411_100 Hb_002411_100 Hb_003948_020--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_003948_020--Hb_000045_050 Hb_010557_010 Hb_010557_010 Hb_003948_020--Hb_010557_010 Hb_003948_020--Hb_000061_250 Hb_007904_060 Hb_007904_060 Hb_005784_030--Hb_007904_060 Hb_005784_030--Hb_000264_280 Hb_000684_200 Hb_000684_200 Hb_005784_030--Hb_000684_200 Hb_000270_280 Hb_000270_280 Hb_005784_030--Hb_000270_280 Hb_005784_030--Hb_003948_020 Hb_000056_310 Hb_000056_310 Hb_148146_010--Hb_000056_310 Hb_000684_430 Hb_000684_430 Hb_148146_010--Hb_000684_430 Hb_005116_100 Hb_005116_100 Hb_148146_010--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_148146_010--Hb_001959_060 Hb_004837_210 Hb_004837_210 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_003752_090--Hb_001649_030 Hb_142663_020 Hb_142663_020 Hb_000834_060--Hb_142663_020 Hb_000479_210 Hb_000479_210 Hb_000834_060--Hb_000479_210 Hb_000834_060--Hb_000684_200 Hb_005181_120 Hb_005181_120 Hb_000834_060--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_000834_060--Hb_010098_040 Hb_000834_060--Hb_010557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.02032 20.3583 76.3064 34.7122 4.93532 4.48501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.17361 12.2688 8.02555 7.24721 77.3484

CAGE analysis