Hb_000479_210

Information

Type -
Description -
Location Contig479: 147435-155874
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12590g
description POPTRDRAFT_577711; hypothetical protein
nr
ID XP_012084780.1
description PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19906 PE=4 SV=1
Gene Ontology
ID GO:0016740
description protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44641: 147510-155745 , PASA_asmbl_44642: 154623-155054 , PASA_asmbl_44643: 156573-159049
cDNA
(Sanger)
(ID:Location)		 040_G19.ab1: 148606-155745

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_210 0.0 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
2 Hb_137600_010 0.0808762428 - - 50S ribosomal protein L1p, putative [Ricinus communis]
3 Hb_000834_060 0.0928376116 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003605_060 0.0944749846 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
5 Hb_002485_050 0.1043259866 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
6 Hb_074548_010 0.1092620721 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_002811_250 0.1165891682 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
8 Hb_010098_040 0.117513711 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
9 Hb_002636_030 0.121995377 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
10 Hb_000002_300 0.1225612491 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
11 Hb_010721_020 0.124051747 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
12 Hb_006583_030 0.1261251591 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
13 Hb_003602_030 0.1266534993 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
14 Hb_007982_040 0.1273535632 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_010557_010 0.131031446 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
16 Hb_005181_120 0.1318661757 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_009393_130 0.1319599357 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
18 Hb_058620_080 0.1336516966 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
19 Hb_000089_140 0.1352559522 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
20 Hb_000679_080 0.1369623285 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_210 Hb_000479_210 Hb_137600_010 Hb_137600_010 Hb_000479_210--Hb_137600_010 Hb_000834_060 Hb_000834_060 Hb_000479_210--Hb_000834_060 Hb_003605_060 Hb_003605_060 Hb_000479_210--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000479_210--Hb_002485_050 Hb_074548_010 Hb_074548_010 Hb_000479_210--Hb_074548_010 Hb_002811_250 Hb_002811_250 Hb_000479_210--Hb_002811_250 Hb_003602_030 Hb_003602_030 Hb_137600_010--Hb_003602_030 Hb_004324_120 Hb_004324_120 Hb_137600_010--Hb_004324_120 Hb_001999_260 Hb_001999_260 Hb_137600_010--Hb_001999_260 Hb_005488_190 Hb_005488_190 Hb_137600_010--Hb_005488_190 Hb_173660_010 Hb_173660_010 Hb_137600_010--Hb_173660_010 Hb_142663_020 Hb_142663_020 Hb_000834_060--Hb_142663_020 Hb_000684_200 Hb_000684_200 Hb_000834_060--Hb_000684_200 Hb_005181_120 Hb_005181_120 Hb_000834_060--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_000834_060--Hb_010098_040 Hb_010557_010 Hb_010557_010 Hb_000834_060--Hb_010557_010 Hb_003605_060--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_003605_060--Hb_000856_280 Hb_003605_060--Hb_074548_010 Hb_009393_130 Hb_009393_130 Hb_003605_060--Hb_009393_130 Hb_007803_040 Hb_007803_040 Hb_003605_060--Hb_007803_040 Hb_002636_030 Hb_002636_030 Hb_003605_060--Hb_002636_030 Hb_002485_050--Hb_007803_040 Hb_002485_050--Hb_000856_280 Hb_000544_070 Hb_000544_070 Hb_002485_050--Hb_000544_070 Hb_002485_050--Hb_074548_010 Hb_002485_050--Hb_009393_130 Hb_005523_040 Hb_005523_040 Hb_074548_010--Hb_005523_040 Hb_074548_010--Hb_000544_070 Hb_074548_010--Hb_002636_030 Hb_005977_040 Hb_005977_040 Hb_074548_010--Hb_005977_040 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170 Hb_002811_250--Hb_005181_120 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.88346 16.9648 55.7955 18.9792 3.83032 0.79984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68721 3.3362 2.50471 3.5913 78.0863

CAGE analysis