Hb_000834_060

Information

Type -
Description -
Location Contig834: 47932-53287
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08790g
description POPTRDRAFT_261857; hypothetical protein
nr
ID XP_012076695.1
description PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q5N800
description Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1
trembl
ID A0A067KBS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07247 PE=4 SV=1
Gene Ontology
ID GO:0016491
description probable chlorophyll b reductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59870: 47945-53205 , PASA_asmbl_59871: 47945-53205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_060 0.0 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_142663_020 0.0919487516 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_000479_210 0.0928376116 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
4 Hb_000684_200 0.0990786858 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_005181_120 0.1024852868 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_010098_040 0.1033161475 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
7 Hb_010557_010 0.1049765911 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
8 Hb_002811_250 0.1066852902 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
9 Hb_003664_030 0.1073418922 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
10 Hb_003605_060 0.1086233695 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
11 Hb_000264_280 0.1087232766 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
12 Hb_091433_050 0.1184328302 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
13 Hb_002636_030 0.1207570561 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
14 Hb_000679_080 0.1239025847 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
15 Hb_003680_060 0.1240236119 - - hypothetical protein VITISV_022322 [Vitis vinifera]
16 Hb_003948_020 0.124790305 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
17 Hb_009393_130 0.1267892423 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
18 Hb_005784_030 0.1268784168 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
19 Hb_000089_140 0.1275272275 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
20 Hb_000442_070 0.131690948 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]

Gene co-expression network

sample Hb_000834_060 Hb_000834_060 Hb_142663_020 Hb_142663_020 Hb_000834_060--Hb_142663_020 Hb_000479_210 Hb_000479_210 Hb_000834_060--Hb_000479_210 Hb_000684_200 Hb_000684_200 Hb_000834_060--Hb_000684_200 Hb_005181_120 Hb_005181_120 Hb_000834_060--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_000834_060--Hb_010098_040 Hb_010557_010 Hb_010557_010 Hb_000834_060--Hb_010557_010 Hb_142663_020--Hb_000684_200 Hb_002811_250 Hb_002811_250 Hb_142663_020--Hb_002811_250 Hb_142663_020--Hb_010557_010 Hb_142663_020--Hb_005181_120 Hb_003177_050 Hb_003177_050 Hb_142663_020--Hb_003177_050 Hb_137600_010 Hb_137600_010 Hb_000479_210--Hb_137600_010 Hb_003605_060 Hb_003605_060 Hb_000479_210--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000479_210--Hb_002485_050 Hb_074548_010 Hb_074548_010 Hb_000479_210--Hb_074548_010 Hb_000479_210--Hb_002811_250 Hb_000684_200--Hb_010557_010 Hb_004162_270 Hb_004162_270 Hb_000684_200--Hb_004162_270 Hb_000684_200--Hb_002811_250 Hb_004837_100 Hb_004837_100 Hb_000684_200--Hb_004837_100 Hb_000684_200--Hb_010098_040 Hb_000684_200--Hb_005181_120 Hb_005181_120--Hb_010098_040 Hb_000516_080 Hb_000516_080 Hb_005181_120--Hb_000516_080 Hb_000679_080 Hb_000679_080 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_002811_250 Hb_007982_040 Hb_007982_040 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_010098_040--Hb_002811_250 Hb_010098_040--Hb_000516_080 Hb_010098_040--Hb_007982_040 Hb_010098_040--Hb_000679_080 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_010557_010--Hb_002811_250 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2355 17.7269 60.1298 27.5258 1.49358 1.71055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.7847 8.44562 4.64408 4.99135 83.9

CAGE analysis