Hb_007982_040

Information

Type -
Description -
Location Contig7982: 30056-44457
Sequence    

Annotation

kegg
ID pxb:103926681
description uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic-like
nr
ID XP_012075202.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
swissprot
ID P73627
description Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1
trembl
ID A0A067KGA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09385 PE=4 SV=1
Gene Ontology
ID GO:0009941
description uncharacterized aarf domain-containing protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58607: 30069-44459 , PASA_asmbl_58608: 30515-31332 , PASA_asmbl_58611: 32126-32367 , PASA_asmbl_58612: 31621-32045 , PASA_asmbl_58613: 30881-31093 , PASA_asmbl_58614: 44973-54122
cDNA
(Sanger)
(ID:Location)		 046_D11.ab1: 30560-31332

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007982_040 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
2 Hb_005181_120 0.0775043664 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_010098_040 0.0790126879 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
4 Hb_010721_020 0.0808368363 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
5 Hb_009692_040 0.0857318981 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000193_220 0.0867060591 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
7 Hb_000516_080 0.0897609497 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
8 Hb_000679_080 0.0984384118 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
9 Hb_002811_250 0.1007577631 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
10 Hb_001053_020 0.1019573418 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
11 Hb_000005_100 0.1083406126 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
12 Hb_071079_020 0.1087388892 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_002811_050 0.1101350019 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
14 Hb_000208_270 0.1133004882 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
15 Hb_000966_040 0.1137105982 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
16 Hb_032631_030 0.113715579 - - phosphatidic acid phosphatase, putative [Ricinus communis]
17 Hb_004242_170 0.117448483 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
18 Hb_000108_150 0.1177539586 - - alpha/beta hydrolase, putative [Ricinus communis]
19 Hb_000264_280 0.1179976301 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
20 Hb_005977_060 0.1198030941 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007982_040 Hb_007982_040 Hb_005181_120 Hb_005181_120 Hb_007982_040--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_007982_040--Hb_010098_040 Hb_010721_020 Hb_010721_020 Hb_007982_040--Hb_010721_020 Hb_009692_040 Hb_009692_040 Hb_007982_040--Hb_009692_040 Hb_000193_220 Hb_000193_220 Hb_007982_040--Hb_000193_220 Hb_000516_080 Hb_000516_080 Hb_007982_040--Hb_000516_080 Hb_005181_120--Hb_010098_040 Hb_005181_120--Hb_000516_080 Hb_000679_080 Hb_000679_080 Hb_005181_120--Hb_000679_080 Hb_002811_250 Hb_002811_250 Hb_005181_120--Hb_002811_250 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_010098_040--Hb_002811_250 Hb_010098_040--Hb_000516_080 Hb_010098_040--Hb_000679_080 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200 Hb_010721_020--Hb_000193_220 Hb_010721_020--Hb_002811_250 Hb_000118_090 Hb_000118_090 Hb_010721_020--Hb_000118_090 Hb_000045_050 Hb_000045_050 Hb_010721_020--Hb_000045_050 Hb_000317_180 Hb_000317_180 Hb_010721_020--Hb_000317_180 Hb_032631_030 Hb_032631_030 Hb_009692_040--Hb_032631_030 Hb_004242_170 Hb_004242_170 Hb_009692_040--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_009692_040--Hb_001053_020 Hb_005977_060 Hb_005977_060 Hb_009692_040--Hb_005977_060 Hb_000441_050 Hb_000441_050 Hb_009692_040--Hb_000441_050 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_000193_220--Hb_000118_090 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_000516_080--Hb_000679_080 Hb_002374_450 Hb_002374_450 Hb_000516_080--Hb_002374_450 Hb_000516_080--Hb_002811_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.221 31.9058 89.6956 54.5525 10.401 9.12064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.949 4.55856 5.70632 16.6364 172.866

CAGE analysis