Hb_000118_090

Information

Type -
Description -
Location Contig118: 218061-221298
Sequence    

Annotation

kegg
ID rcu:RCOM_1583670
description Glutamyl-tRNA reductase 1, chloroplast precursor, putative (EC:1.2.1.70)
nr
ID XP_002509995.1
description Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P93111
description Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1
trembl
ID B9R6Q2
description Glutamyl-tRNA reductase OS=Ricinus communis GN=RCOM_1583670 PE=3 SV=1
Gene Ontology
ID GO:0009507
description glutamyl-trna reductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05421: 218213-221418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000118_090 0.0 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
2 Hb_010721_020 0.0788316902 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
3 Hb_011649_010 0.0814642719 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
4 Hb_000193_220 0.0890896497 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
5 Hb_000045_050 0.107262714 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
6 Hb_071079_020 0.1120626328 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_000544_080 0.1237523378 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
8 Hb_009692_040 0.1252140138 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_007982_040 0.1257528458 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
10 Hb_005488_190 0.1263559814 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
11 Hb_002811_250 0.1268075849 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
12 Hb_001907_080 0.1282948149 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
13 Hb_000317_180 0.12936678 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
14 Hb_000035_340 0.1297499318 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000029_330 0.1307836539 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
16 Hb_004055_160 0.1329741192 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
17 Hb_007803_040 0.133432895 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
18 Hb_058620_080 0.1337515504 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
19 Hb_000803_170 0.1348309209 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
20 Hb_000108_150 0.1352133716 - - alpha/beta hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000118_090 Hb_000118_090 Hb_010721_020 Hb_010721_020 Hb_000118_090--Hb_010721_020 Hb_011649_010 Hb_011649_010 Hb_000118_090--Hb_011649_010 Hb_000193_220 Hb_000193_220 Hb_000118_090--Hb_000193_220 Hb_000045_050 Hb_000045_050 Hb_000118_090--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000118_090--Hb_071079_020 Hb_000544_080 Hb_000544_080 Hb_000118_090--Hb_000544_080 Hb_010721_020--Hb_000193_220 Hb_002811_250 Hb_002811_250 Hb_010721_020--Hb_002811_250 Hb_007982_040 Hb_007982_040 Hb_010721_020--Hb_007982_040 Hb_010721_020--Hb_000045_050 Hb_000317_180 Hb_000317_180 Hb_010721_020--Hb_000317_180 Hb_011649_010--Hb_010721_020 Hb_011649_010--Hb_000317_180 Hb_011649_010--Hb_000193_220 Hb_011649_010--Hb_071079_020 Hb_011649_010--Hb_000045_050 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_000193_220--Hb_007982_040 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_000061_250 Hb_000061_250 Hb_000045_050--Hb_000061_250 Hb_000108_150 Hb_000108_150 Hb_000045_050--Hb_000108_150 Hb_000045_050--Hb_000544_080 Hb_003948_020 Hb_003948_020 Hb_000045_050--Hb_003948_020 Hb_000045_050--Hb_002811_250 Hb_005181_120 Hb_005181_120 Hb_000045_050--Hb_005181_120 Hb_071079_020--Hb_000108_150 Hb_071079_020--Hb_000045_050 Hb_000099_170 Hb_000099_170 Hb_071079_020--Hb_000099_170 Hb_071079_020--Hb_000061_250 Hb_004242_170 Hb_004242_170 Hb_071079_020--Hb_004242_170 Hb_071079_020--Hb_005181_120 Hb_011519_050 Hb_011519_050 Hb_000544_080--Hb_011519_050 Hb_058620_080 Hb_058620_080 Hb_000544_080--Hb_058620_080 Hb_000544_080--Hb_000061_250 Hb_009393_130 Hb_009393_130 Hb_000544_080--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_000544_080--Hb_005488_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3936 10.6173 95.6887 52.5757 19.5676 10.6352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.671 2.89918 4.75917 9.86741 182.223

CAGE analysis