Hb_005977_060

Information

Type -
Description -
Location Contig5977: 28423-34799
Sequence    

Annotation

kegg
ID rcu:RCOM_1723200
description hypothetical protein
nr
ID XP_002521158.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S589
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1723200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50421: 28435-34748 , PASA_asmbl_50422: 30015-32490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005977_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000441_050 0.0563589724 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
3 Hb_005276_070 0.07867125 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
4 Hb_004242_170 0.0931507962 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
5 Hb_009692_040 0.1002665554 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001365_020 0.1003060616 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
7 Hb_001053_020 0.1010308302 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
8 Hb_000612_090 0.1053452757 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
9 Hb_005181_120 0.1085300326 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_032631_030 0.1110657691 - - phosphatidic acid phosphatase, putative [Ricinus communis]
11 Hb_000679_080 0.1121007284 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
12 Hb_010098_040 0.112873287 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
13 Hb_000975_050 0.1137465598 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
14 Hb_002662_110 0.1146805687 - - Kinesin heavy chain, putative [Ricinus communis]
15 Hb_000163_110 0.1147846869 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
16 Hb_002374_450 0.1164333531 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
17 Hb_003053_070 0.1176972243 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
18 Hb_001252_030 0.1181921035 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
19 Hb_000516_080 0.1183300562 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
20 Hb_007982_040 0.1198030941 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005977_060 Hb_005977_060 Hb_000441_050 Hb_000441_050 Hb_005977_060--Hb_000441_050 Hb_005276_070 Hb_005276_070 Hb_005977_060--Hb_005276_070 Hb_004242_170 Hb_004242_170 Hb_005977_060--Hb_004242_170 Hb_009692_040 Hb_009692_040 Hb_005977_060--Hb_009692_040 Hb_001365_020 Hb_001365_020 Hb_005977_060--Hb_001365_020 Hb_001053_020 Hb_001053_020 Hb_005977_060--Hb_001053_020 Hb_000441_050--Hb_004242_170 Hb_000441_050--Hb_001053_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_000441_050--Hb_005276_070 Hb_002662_110 Hb_002662_110 Hb_005276_070--Hb_002662_110 Hb_005276_070--Hb_001365_020 Hb_003053_070 Hb_003053_070 Hb_005276_070--Hb_003053_070 Hb_010632_020 Hb_010632_020 Hb_005276_070--Hb_010632_020 Hb_004242_170--Hb_001053_020 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_004242_170--Hb_009692_040 Hb_007982_040 Hb_007982_040 Hb_009692_040--Hb_007982_040 Hb_032631_030 Hb_032631_030 Hb_009692_040--Hb_032631_030 Hb_009692_040--Hb_001053_020 Hb_009692_040--Hb_000441_050 Hb_001365_010 Hb_001365_010 Hb_001365_020--Hb_001365_010 Hb_001365_020--Hb_003053_070 Hb_000163_110 Hb_000163_110 Hb_001365_020--Hb_000163_110 Hb_000042_050 Hb_000042_050 Hb_001053_020--Hb_000042_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.34037 8.63452 30.5632 29.3806 2.72158 3.51675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62394 1.04727 4.07204 12.965 63.0906

CAGE analysis