Hb_010632_020

Information

Type -
Description -
Location Contig10632: 45185-53769
Sequence    

Annotation

kegg
ID pop:POPTR_0006s185902
description hypothetical protein
nr
ID XP_006381826.1
description hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
swissprot
ID O66557
description Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1
trembl
ID U5G7X5
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s185902g PE=3 SV=1
Gene Ontology
ID GO:0008483
description bifunctional dethiobiotin synthetase -diamino-pelargonic acid mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02016: 48011-53975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010632_020 0.0 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
2 Hb_001365_030 0.0854949057 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
3 Hb_001360_030 0.0923295264 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
4 Hb_000940_030 0.1076851013 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
5 Hb_002374_450 0.1101811586 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
6 Hb_003053_070 0.110797387 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
7 Hb_005276_070 0.1129046284 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
8 Hb_002044_160 0.1138946774 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
9 Hb_000310_060 0.114612851 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
10 Hb_000454_100 0.1151809966 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_000996_080 0.1163488148 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
12 Hb_003680_090 0.116458652 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
13 Hb_022425_050 0.1177371038 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
14 Hb_004162_270 0.1181732512 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
15 Hb_002942_140 0.1194469516 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
16 Hb_000270_280 0.1209425763 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_000414_080 0.1215060274 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
18 Hb_000230_530 0.1216912918 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004223_270 0.121960342 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
20 Hb_000487_370 0.1221656905 - - -

Gene co-expression network

sample Hb_010632_020 Hb_010632_020 Hb_001365_030 Hb_001365_030 Hb_010632_020--Hb_001365_030 Hb_001360_030 Hb_001360_030 Hb_010632_020--Hb_001360_030 Hb_000940_030 Hb_000940_030 Hb_010632_020--Hb_000940_030 Hb_002374_450 Hb_002374_450 Hb_010632_020--Hb_002374_450 Hb_003053_070 Hb_003053_070 Hb_010632_020--Hb_003053_070 Hb_005276_070 Hb_005276_070 Hb_010632_020--Hb_005276_070 Hb_007765_130 Hb_007765_130 Hb_001365_030--Hb_007765_130 Hb_001365_030--Hb_000940_030 Hb_000679_080 Hb_000679_080 Hb_001365_030--Hb_000679_080 Hb_002044_160 Hb_002044_160 Hb_001365_030--Hb_002044_160 Hb_001365_030--Hb_003053_070 Hb_001365_020 Hb_001365_020 Hb_001360_030--Hb_001365_020 Hb_002636_060 Hb_002636_060 Hb_001360_030--Hb_002636_060 Hb_112064_010 Hb_112064_010 Hb_001360_030--Hb_112064_010 Hb_001360_030--Hb_005276_070 Hb_001360_030--Hb_001365_030 Hb_010868_040 Hb_010868_040 Hb_000940_030--Hb_010868_040 Hb_000310_060 Hb_000310_060 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_003055_070 Hb_003055_070 Hb_000940_030--Hb_003055_070 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_001348_090 Hb_001348_090 Hb_002374_450--Hb_001348_090 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_000441_050 Hb_000441_050 Hb_002374_450--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_002374_450--Hb_004242_170 Hb_002374_450--Hb_002044_160 Hb_000951_120 Hb_000951_120 Hb_002374_450--Hb_000951_120 Hb_004837_100 Hb_004837_100 Hb_003053_070--Hb_004837_100 Hb_003053_070--Hb_001365_020 Hb_000684_200 Hb_000684_200 Hb_003053_070--Hb_000684_200 Hb_004162_270 Hb_004162_270 Hb_003053_070--Hb_004162_270 Hb_000516_080 Hb_000516_080 Hb_003053_070--Hb_000516_080 Hb_005977_060 Hb_005977_060 Hb_005276_070--Hb_005977_060 Hb_002662_110 Hb_002662_110 Hb_005276_070--Hb_002662_110 Hb_005276_070--Hb_000441_050 Hb_005276_070--Hb_001365_020 Hb_005276_070--Hb_003053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.749627 1.90044 7.46795 4.24274 0.472283 0.543709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.921653 0.780399 0.401926 3.68255 8.47192

CAGE analysis