Hb_002636_060

Information

Type -
Description -
Location Contig2636: 78361-80472
Sequence    

Annotation

kegg
ID rcu:RCOM_1466320
description hypothetical protein
nr
ID XP_002514568.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3ZBK2
description Redox-regulatory protein FAM213A OS=Bos taurus GN=FAM213A PE=2 SV=1
trembl
ID B9RLE9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1466320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27512: 79661-80252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001360_030 0.111810979 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
3 Hb_021346_050 0.1305430558 - - xylulose kinase, putative [Ricinus communis]
4 Hb_000032_610 0.1389647415 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
5 Hb_005839_090 0.1431386517 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g56230 isoform X1 [Populus euphratica]
6 Hb_000416_090 0.1439225719 - - Aquaporin NIP1.1, putative [Ricinus communis]
7 Hb_022693_110 0.145976712 - - phosphate transporter [Manihot esculenta]
8 Hb_005276_070 0.1462826657 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
9 Hb_010632_020 0.1480401701 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
10 Hb_005144_060 0.1497284679 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
11 Hb_074197_030 0.1531824354 - - unnamed protein product [Vitis vinifera]
12 Hb_004855_020 0.1558374801 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
13 Hb_000120_300 0.1566130412 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
14 Hb_001365_030 0.1580851412 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
15 Hb_007007_130 0.1581925175 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
16 Hb_004446_060 0.1600751913 - - neutral/alkaline invertase [Manihot esculenta]
17 Hb_000207_350 0.1607989461 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
18 Hb_000926_040 0.1610657176 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
19 Hb_000866_040 0.1623840286 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
20 Hb_003915_020 0.1624318483 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002636_060 Hb_002636_060 Hb_001360_030 Hb_001360_030 Hb_002636_060--Hb_001360_030 Hb_021346_050 Hb_021346_050 Hb_002636_060--Hb_021346_050 Hb_000032_610 Hb_000032_610 Hb_002636_060--Hb_000032_610 Hb_005839_090 Hb_005839_090 Hb_002636_060--Hb_005839_090 Hb_000416_090 Hb_000416_090 Hb_002636_060--Hb_000416_090 Hb_022693_110 Hb_022693_110 Hb_002636_060--Hb_022693_110 Hb_010632_020 Hb_010632_020 Hb_001360_030--Hb_010632_020 Hb_001365_020 Hb_001365_020 Hb_001360_030--Hb_001365_020 Hb_112064_010 Hb_112064_010 Hb_001360_030--Hb_112064_010 Hb_005276_070 Hb_005276_070 Hb_001360_030--Hb_005276_070 Hb_001365_030 Hb_001365_030 Hb_001360_030--Hb_001365_030 Hb_000120_300 Hb_000120_300 Hb_021346_050--Hb_000120_300 Hb_021346_050--Hb_000032_610 Hb_007943_180 Hb_007943_180 Hb_021346_050--Hb_007943_180 Hb_010868_040 Hb_010868_040 Hb_021346_050--Hb_010868_040 Hb_002942_120 Hb_002942_120 Hb_021346_050--Hb_002942_120 Hb_004102_080 Hb_004102_080 Hb_021346_050--Hb_004102_080 Hb_000465_410 Hb_000465_410 Hb_000032_610--Hb_000465_410 Hb_005237_020 Hb_005237_020 Hb_000032_610--Hb_005237_020 Hb_002701_070 Hb_002701_070 Hb_000032_610--Hb_002701_070 Hb_001180_010 Hb_001180_010 Hb_000032_610--Hb_001180_010 Hb_019613_030 Hb_019613_030 Hb_000032_610--Hb_019613_030 Hb_048476_140 Hb_048476_140 Hb_000032_610--Hb_048476_140 Hb_006816_250 Hb_006816_250 Hb_005839_090--Hb_006816_250 Hb_005839_090--Hb_000032_610 Hb_000926_040 Hb_000926_040 Hb_005839_090--Hb_000926_040 Hb_000270_100 Hb_000270_100 Hb_005839_090--Hb_000270_100 Hb_000347_100 Hb_000347_100 Hb_005839_090--Hb_000347_100 Hb_004116_050 Hb_004116_050 Hb_000416_090--Hb_004116_050 Hb_001405_040 Hb_001405_040 Hb_000416_090--Hb_001405_040 Hb_029639_030 Hb_029639_030 Hb_000416_090--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_000416_090--Hb_000181_220 Hb_019570_010 Hb_019570_010 Hb_000416_090--Hb_019570_010 Hb_000318_010 Hb_000318_010 Hb_000416_090--Hb_000318_010 Hb_000200_330 Hb_000200_330 Hb_022693_110--Hb_000200_330 Hb_022693_110--Hb_048476_140 Hb_000076_030 Hb_000076_030 Hb_022693_110--Hb_000076_030 Hb_011174_040 Hb_011174_040 Hb_022693_110--Hb_011174_040 Hb_000689_050 Hb_000689_050 Hb_022693_110--Hb_000689_050 Hb_004994_330 Hb_004994_330 Hb_022693_110--Hb_004994_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106209 0.207521 2.26843 1.38788 0.0124768 0.16152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.121376 0.0954911 0.0448945 1.20026 1.8998

CAGE analysis