Hb_005839_090

Information

Type transcription factor
Description TF Family: TRAF
Location Contig5839: 70256-72161
Sequence    

Annotation

kegg
ID pop:POPTR_0013s08150g
description hypothetical protein
nr
ID XP_011008649.1
description PREDICTED: BTB/POZ domain-containing protein At3g56230 isoform X1 [Populus euphratica]
swissprot
ID Q9LYL9
description BTB/POZ domain-containing protein At3g56230 OS=Arabidopsis thaliana GN=At3g56230 PE=2 SV=1
trembl
ID U5FWZ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s08150g PE=4 SV=1
Gene Ontology
ID GO:0010413
description btb poz domain-containing protein at3g56230-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_090 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g56230 isoform X1 [Populus euphratica]
2 Hb_006816_250 0.1329118388 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
3 Hb_000032_610 0.1331441639 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
4 Hb_000926_040 0.1347374729 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
5 Hb_000270_100 0.1397694556 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
6 Hb_002636_060 0.1431386517 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000347_100 0.1521439855 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]
8 Hb_001517_070 0.1521952315 - - protein with unknown function [Ricinus communis]
9 Hb_003177_050 0.1563274123 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
10 Hb_021346_050 0.1585784575 - - xylulose kinase, putative [Ricinus communis]
11 Hb_000465_410 0.1607162343 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004994_330 0.160923396 - - DNA binding protein, putative [Ricinus communis]
13 Hb_010381_040 0.1613158643 - - beta-galactosidase, putative [Ricinus communis]
14 Hb_019613_030 0.1647026616 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
15 Hb_001180_010 0.166268063 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
16 Hb_002662_110 0.166701909 - - Kinesin heavy chain, putative [Ricinus communis]
17 Hb_002701_070 0.1679112846 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
18 Hb_172426_060 0.1681661344 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
19 Hb_010868_040 0.1698914766 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
20 Hb_000207_350 0.1706092044 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]

Gene co-expression network

sample Hb_005839_090 Hb_005839_090 Hb_006816_250 Hb_006816_250 Hb_005839_090--Hb_006816_250 Hb_000032_610 Hb_000032_610 Hb_005839_090--Hb_000032_610 Hb_000926_040 Hb_000926_040 Hb_005839_090--Hb_000926_040 Hb_000270_100 Hb_000270_100 Hb_005839_090--Hb_000270_100 Hb_002636_060 Hb_002636_060 Hb_005839_090--Hb_002636_060 Hb_000347_100 Hb_000347_100 Hb_005839_090--Hb_000347_100 Hb_000645_260 Hb_000645_260 Hb_006816_250--Hb_000645_260 Hb_000283_030 Hb_000283_030 Hb_006816_250--Hb_000283_030 Hb_001377_120 Hb_001377_120 Hb_006816_250--Hb_001377_120 Hb_006816_250--Hb_000926_040 Hb_005725_240 Hb_005725_240 Hb_006816_250--Hb_005725_240 Hb_000243_060 Hb_000243_060 Hb_006816_250--Hb_000243_060 Hb_000465_410 Hb_000465_410 Hb_000032_610--Hb_000465_410 Hb_005237_020 Hb_005237_020 Hb_000032_610--Hb_005237_020 Hb_002701_070 Hb_002701_070 Hb_000032_610--Hb_002701_070 Hb_001180_010 Hb_001180_010 Hb_000032_610--Hb_001180_010 Hb_019613_030 Hb_019613_030 Hb_000032_610--Hb_019613_030 Hb_048476_140 Hb_048476_140 Hb_000032_610--Hb_048476_140 Hb_010868_040 Hb_010868_040 Hb_000926_040--Hb_010868_040 Hb_000926_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_000926_040--Hb_010381_040 Hb_004855_020 Hb_004855_020 Hb_000926_040--Hb_004855_020 Hb_004102_080 Hb_004102_080 Hb_000926_040--Hb_004102_080 Hb_001357_050 Hb_001357_050 Hb_000270_100--Hb_001357_050 Hb_000270_100--Hb_000347_100 Hb_041692_010 Hb_041692_010 Hb_000270_100--Hb_041692_010 Hb_007811_020 Hb_007811_020 Hb_000270_100--Hb_007811_020 Hb_001186_100 Hb_001186_100 Hb_000270_100--Hb_001186_100 Hb_001360_030 Hb_001360_030 Hb_002636_060--Hb_001360_030 Hb_021346_050 Hb_021346_050 Hb_002636_060--Hb_021346_050 Hb_002636_060--Hb_000032_610 Hb_000416_090 Hb_000416_090 Hb_002636_060--Hb_000416_090 Hb_022693_110 Hb_022693_110 Hb_002636_060--Hb_022693_110 Hb_009767_060 Hb_009767_060 Hb_000347_100--Hb_009767_060 Hb_003580_050 Hb_003580_050 Hb_000347_100--Hb_003580_050 Hb_116647_010 Hb_116647_010 Hb_000347_100--Hb_116647_010 Hb_000347_100--Hb_041692_010 Hb_000347_100--Hb_000416_090 Hb_029639_030 Hb_029639_030 Hb_000347_100--Hb_029639_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0853515 0.0525409 1.03546 0.694558 0 0.0681193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0654246 0.0514448 0 0.228869 0.828057

CAGE analysis