Hb_116647_010

Information

Type -
Description -
Location Contig116647: 7021-7639
Sequence    

Annotation

kegg
ID rcu:RCOM_2106310
description hypothetical protein
nr
ID XP_002536231.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TDB2
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_2106310 PE=4 SV=1
Gene Ontology
ID GO:0016740
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05112: 7591-7757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116647_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005568_020 0.1024596654 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
3 Hb_002027_430 0.1056197999 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
4 Hb_001863_010 0.1154928154 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
5 Hb_000735_020 0.1158949773 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
6 Hb_064546_010 0.1160727361 - - PREDICTED: peroxidase 3 [Jatropha curcas]
7 Hb_001085_190 0.120108622 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
8 Hb_003050_020 0.1201152837 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
9 Hb_004696_010 0.1212905456 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
10 Hb_000347_100 0.121716731 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]
11 Hb_003606_050 0.122894147 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
12 Hb_011918_070 0.1243347173 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
13 Hb_001936_180 0.1276173041 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
14 Hb_000303_060 0.1285905197 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_012518_080 0.1302846237 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
16 Hb_007811_020 0.1335778927 - - PREDICTED: expansin-A6 [Jatropha curcas]
17 Hb_002073_170 0.1340692409 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
18 Hb_028008_040 0.1364977335 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000735_060 0.1368961466 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
20 Hb_000418_170 0.1392884423 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]

Gene co-expression network

sample Hb_116647_010 Hb_116647_010 Hb_005568_020 Hb_005568_020 Hb_116647_010--Hb_005568_020 Hb_002027_430 Hb_002027_430 Hb_116647_010--Hb_002027_430 Hb_001863_010 Hb_001863_010 Hb_116647_010--Hb_001863_010 Hb_000735_020 Hb_000735_020 Hb_116647_010--Hb_000735_020 Hb_064546_010 Hb_064546_010 Hb_116647_010--Hb_064546_010 Hb_001085_190 Hb_001085_190 Hb_116647_010--Hb_001085_190 Hb_000735_060 Hb_000735_060 Hb_005568_020--Hb_000735_060 Hb_002078_390 Hb_002078_390 Hb_005568_020--Hb_002078_390 Hb_003606_050 Hb_003606_050 Hb_005568_020--Hb_003606_050 Hb_000008_200 Hb_000008_200 Hb_005568_020--Hb_000008_200 Hb_128196_010 Hb_128196_010 Hb_005568_020--Hb_128196_010 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350 Hb_001936_180 Hb_001936_180 Hb_002027_430--Hb_001936_180 Hb_000834_220 Hb_000834_220 Hb_002027_430--Hb_000834_220 Hb_001597_030 Hb_001597_030 Hb_002027_430--Hb_001597_030 Hb_001440_010 Hb_001440_010 Hb_002027_430--Hb_001440_010 Hb_002027_430--Hb_003606_050 Hb_001524_120 Hb_001524_120 Hb_001863_010--Hb_001524_120 Hb_000260_380 Hb_000260_380 Hb_001863_010--Hb_000260_380 Hb_003228_050 Hb_003228_050 Hb_001863_010--Hb_003228_050 Hb_000431_100 Hb_000431_100 Hb_001863_010--Hb_000431_100 Hb_003050_020 Hb_003050_020 Hb_001863_010--Hb_003050_020 Hb_000735_020--Hb_001085_190 Hb_012518_080 Hb_012518_080 Hb_000735_020--Hb_012518_080 Hb_011918_070 Hb_011918_070 Hb_000735_020--Hb_011918_070 Hb_033312_070 Hb_033312_070 Hb_000735_020--Hb_033312_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_006788_110 Hb_006788_110 Hb_000735_020--Hb_006788_110 Hb_000984_130 Hb_000984_130 Hb_064546_010--Hb_000984_130 Hb_064546_010--Hb_000735_020 Hb_001357_050 Hb_001357_050 Hb_064546_010--Hb_001357_050 Hb_064546_010--Hb_003606_050 Hb_064546_010--Hb_033312_070 Hb_001085_190--Hb_011918_070 Hb_009113_080 Hb_009113_080 Hb_001085_190--Hb_009113_080 Hb_001085_190--Hb_012518_080 Hb_000005_360 Hb_000005_360 Hb_001085_190--Hb_000005_360 Hb_001085_190--Hb_003606_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00476 4.35871 25.7189 36.2894 0.057811 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74477 0.948954 0.178626 7.3639 18.5289

CAGE analysis