Hb_001936_180

Information

Type -
Description -
Location Contig1936: 145649-151655
Sequence    

Annotation

kegg
ID tcc:TCM_010430
description Nsp-interacting kinase 3 isoform 1
nr
ID XP_012085434.1
description PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
swissprot
ID Q93ZS4
description Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1
trembl
ID A0A067JRP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17779 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nsp-interacting kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19351: 145779-151705 , PASA_asmbl_19353: 147722-147846 , PASA_asmbl_19354: 149650-149783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_180 0.0 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
2 Hb_022092_110 0.071812778 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
3 Hb_000365_430 0.0815587038 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
4 Hb_001440_010 0.084289378 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
5 Hb_001946_200 0.0863895223 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
6 Hb_000645_160 0.0900838481 - - protein translocase, putative [Ricinus communis]
7 Hb_000418_170 0.0920349361 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
8 Hb_000834_220 0.0924838437 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
9 Hb_000735_060 0.0949835472 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
10 Hb_007290_050 0.0984792305 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
11 Hb_026240_020 0.102638217 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
12 Hb_009189_100 0.1027769969 - - PREDICTED: patellin-6 [Jatropha curcas]
13 Hb_002027_430 0.1039490757 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
14 Hb_000932_060 0.1062640356 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001085_190 0.1077058479 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
16 Hb_003092_020 0.109277979 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
17 Hb_005568_020 0.1102287764 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
18 Hb_003606_050 0.1109379976 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
19 Hb_000742_130 0.1137326012 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
20 Hb_032920_030 0.1148372403 - - signal transducer, putative [Ricinus communis]

Gene co-expression network

sample Hb_001936_180 Hb_001936_180 Hb_022092_110 Hb_022092_110 Hb_001936_180--Hb_022092_110 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_001440_010 Hb_001440_010 Hb_001936_180--Hb_001440_010 Hb_001946_200 Hb_001946_200 Hb_001936_180--Hb_001946_200 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_000418_170 Hb_000418_170 Hb_001936_180--Hb_000418_170 Hb_022092_110--Hb_001946_200 Hb_022092_110--Hb_001440_010 Hb_000735_060 Hb_000735_060 Hb_022092_110--Hb_000735_060 Hb_022092_110--Hb_000418_170 Hb_002311_280 Hb_002311_280 Hb_022092_110--Hb_002311_280 Hb_003092_020 Hb_003092_020 Hb_000365_430--Hb_003092_020 Hb_009189_100 Hb_009189_100 Hb_000365_430--Hb_009189_100 Hb_007290_050 Hb_007290_050 Hb_000365_430--Hb_007290_050 Hb_000098_260 Hb_000098_260 Hb_000365_430--Hb_000098_260 Hb_000329_720 Hb_000329_720 Hb_000365_430--Hb_000329_720 Hb_000834_220 Hb_000834_220 Hb_001440_010--Hb_000834_220 Hb_001440_010--Hb_001946_200 Hb_000230_360 Hb_000230_360 Hb_001440_010--Hb_000230_360 Hb_003656_090 Hb_003656_090 Hb_001440_010--Hb_003656_090 Hb_009113_080 Hb_009113_080 Hb_001946_200--Hb_009113_080 Hb_026240_020 Hb_026240_020 Hb_001946_200--Hb_026240_020 Hb_032920_030 Hb_032920_030 Hb_001946_200--Hb_032920_030 Hb_000742_130 Hb_000742_130 Hb_000645_160--Hb_000742_130 Hb_000645_160--Hb_032920_030 Hb_000645_160--Hb_000098_260 Hb_001138_070 Hb_001138_070 Hb_000645_160--Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_000645_160--Hb_149055_010 Hb_000627_040 Hb_000627_040 Hb_000418_170--Hb_000627_040 Hb_005730_110 Hb_005730_110 Hb_000418_170--Hb_005730_110 Hb_005675_050 Hb_005675_050 Hb_000418_170--Hb_005675_050 Hb_021065_010 Hb_021065_010 Hb_000418_170--Hb_021065_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134709 5.61663 16.5381 21.1125 0.100381 0.0887875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.477772 0.125321 0.167552 6.46023 9.39608

CAGE analysis