Hb_003050_020

Information

Type -
Description -
Location Contig3050: 16542-17995
Sequence    

Annotation

kegg
ID pop:POPTR_0011s08320g
description glycosyl hydrolase family 17 family protein
nr
ID XP_006377609.1
description glycosyl hydrolase family 17 family protein [Populus trichocarpa]
swissprot
ID Q8L868
description Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1
trembl
ID B9N9R5
description Glycosyl hydrolase family 17 family protein OS=Populus trichocarpa GN=POPTR_0011s08320g PE=4 SV=1
Gene Ontology
ID GO:0042973
description glycosyl hydrolase family 17 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32117: 17702-18635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_020 0.0 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
2 Hb_000907_160 0.1066374205 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_000735_020 0.117528713 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
4 Hb_116647_010 0.1201152837 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000003_280 0.1213552318 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000959_320 0.1255283835 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
7 Hb_007811_020 0.1269489049 - - PREDICTED: expansin-A6 [Jatropha curcas]
8 Hb_000190_170 0.1295129917 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
9 Hb_000342_040 0.1297457561 - - pollen specific protein sf21, putative [Ricinus communis]
10 Hb_002781_040 0.1361661457 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001085_190 0.136185618 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
12 Hb_064546_010 0.1367369007 - - PREDICTED: peroxidase 3 [Jatropha curcas]
13 Hb_000878_050 0.138165006 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
14 Hb_003893_180 0.1381819673 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
15 Hb_011918_070 0.1402686738 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
16 Hb_001863_010 0.1407414194 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
17 Hb_000303_060 0.1407639673 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_000020_050 0.1411778341 - - PREDICTED: expansin-A6 [Jatropha curcas]
19 Hb_000679_250 0.1416324848 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
20 Hb_025787_020 0.142885291 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_020 Hb_003050_020 Hb_000907_160 Hb_000907_160 Hb_003050_020--Hb_000907_160 Hb_000735_020 Hb_000735_020 Hb_003050_020--Hb_000735_020 Hb_116647_010 Hb_116647_010 Hb_003050_020--Hb_116647_010 Hb_000003_280 Hb_000003_280 Hb_003050_020--Hb_000003_280 Hb_000959_320 Hb_000959_320 Hb_003050_020--Hb_000959_320 Hb_007811_020 Hb_007811_020 Hb_003050_020--Hb_007811_020 Hb_000190_170 Hb_000190_170 Hb_000907_160--Hb_000190_170 Hb_000907_160--Hb_000003_280 Hb_003894_050 Hb_003894_050 Hb_000907_160--Hb_003894_050 Hb_000907_160--Hb_000959_320 Hb_053264_010 Hb_053264_010 Hb_000907_160--Hb_053264_010 Hb_001085_190 Hb_001085_190 Hb_000735_020--Hb_001085_190 Hb_012518_080 Hb_012518_080 Hb_000735_020--Hb_012518_080 Hb_011918_070 Hb_011918_070 Hb_000735_020--Hb_011918_070 Hb_033312_070 Hb_033312_070 Hb_000735_020--Hb_033312_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_006788_110 Hb_006788_110 Hb_000735_020--Hb_006788_110 Hb_005568_020 Hb_005568_020 Hb_116647_010--Hb_005568_020 Hb_002027_430 Hb_002027_430 Hb_116647_010--Hb_002027_430 Hb_001863_010 Hb_001863_010 Hb_116647_010--Hb_001863_010 Hb_116647_010--Hb_000735_020 Hb_064546_010 Hb_064546_010 Hb_116647_010--Hb_064546_010 Hb_116647_010--Hb_001085_190 Hb_000878_050 Hb_000878_050 Hb_000003_280--Hb_000878_050 Hb_010962_020 Hb_010962_020 Hb_000003_280--Hb_010962_020 Hb_000003_280--Hb_053264_010 Hb_000103_450 Hb_000103_450 Hb_000003_280--Hb_000103_450 Hb_001898_040 Hb_001898_040 Hb_000003_280--Hb_001898_040 Hb_006846_040 Hb_006846_040 Hb_000003_280--Hb_006846_040 Hb_003583_010 Hb_003583_010 Hb_000959_320--Hb_003583_010 Hb_000920_230 Hb_000920_230 Hb_000959_320--Hb_000920_230 Hb_000103_070 Hb_000103_070 Hb_000959_320--Hb_000103_070 Hb_000003_210 Hb_000003_210 Hb_000959_320--Hb_000003_210 Hb_004435_020 Hb_004435_020 Hb_007811_020--Hb_004435_020 Hb_001544_090 Hb_001544_090 Hb_007811_020--Hb_001544_090 Hb_007218_040 Hb_007218_040 Hb_007811_020--Hb_007218_040 Hb_007811_020--Hb_000878_050 Hb_000392_110 Hb_000392_110 Hb_007811_020--Hb_000392_110 Hb_001541_130 Hb_001541_130 Hb_007811_020--Hb_001541_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0181935 0.439037 2.65152 4.98726 0 0.0191807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207825 0.130781 0 0.432378 1.62209

CAGE analysis