Hb_000959_320

Information

Type -
Description -
Location Contig959: 281812-282411
Sequence    

Annotation

kegg
ID pop:POPTR_0019s02660g
description hypothetical protein
nr
ID XP_012457465.1
description PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2T6I6
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G115200 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105778325

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63674: 281923-282593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_320 0.0 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
2 Hb_003050_020 0.1255283835 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
3 Hb_003583_010 0.1290192727 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
4 Hb_000907_160 0.1404990183 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_000920_230 0.1458168969 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000103_070 0.1475869457 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
7 Hb_000003_210 0.1585481824 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
8 Hb_003893_180 0.1612535937 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
9 Hb_006002_050 0.1655859324 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
10 Hb_000297_140 0.1670051604 - - hypothetical protein RCOM_0293450 [Ricinus communis]
11 Hb_000003_280 0.1681853681 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000342_040 0.1726836755 - - pollen specific protein sf21, putative [Ricinus communis]
13 Hb_007811_020 0.1735682246 - - PREDICTED: expansin-A6 [Jatropha curcas]
14 Hb_000963_210 0.1737254386 - - structural constituent of cell wall, putative [Ricinus communis]
15 Hb_005542_070 0.1744468309 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
16 Hb_002233_160 0.1745192098 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
17 Hb_002592_020 0.1746460189 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
18 Hb_000190_170 0.1750614481 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
19 Hb_005253_020 0.1759252924 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
20 Hb_048476_130 0.1783910937 - - scab resistance family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000959_320 Hb_000959_320 Hb_003050_020 Hb_003050_020 Hb_000959_320--Hb_003050_020 Hb_003583_010 Hb_003583_010 Hb_000959_320--Hb_003583_010 Hb_000907_160 Hb_000907_160 Hb_000959_320--Hb_000907_160 Hb_000920_230 Hb_000920_230 Hb_000959_320--Hb_000920_230 Hb_000103_070 Hb_000103_070 Hb_000959_320--Hb_000103_070 Hb_000003_210 Hb_000003_210 Hb_000959_320--Hb_000003_210 Hb_003050_020--Hb_000907_160 Hb_000735_020 Hb_000735_020 Hb_003050_020--Hb_000735_020 Hb_116647_010 Hb_116647_010 Hb_003050_020--Hb_116647_010 Hb_000003_280 Hb_000003_280 Hb_003050_020--Hb_000003_280 Hb_007811_020 Hb_007811_020 Hb_003050_020--Hb_007811_020 Hb_000130_460 Hb_000130_460 Hb_003583_010--Hb_000130_460 Hb_000190_170 Hb_000190_170 Hb_003583_010--Hb_000190_170 Hb_003583_010--Hb_000003_210 Hb_000140_320 Hb_000140_320 Hb_003583_010--Hb_000140_320 Hb_007625_010 Hb_007625_010 Hb_003583_010--Hb_007625_010 Hb_000907_160--Hb_000190_170 Hb_000907_160--Hb_000003_280 Hb_003894_050 Hb_003894_050 Hb_000907_160--Hb_003894_050 Hb_053264_010 Hb_053264_010 Hb_000907_160--Hb_053264_010 Hb_000920_230--Hb_000907_160 Hb_002498_030 Hb_002498_030 Hb_000920_230--Hb_002498_030 Hb_000920_230--Hb_003050_020 Hb_017439_010 Hb_017439_010 Hb_000920_230--Hb_017439_010 Hb_002592_020 Hb_002592_020 Hb_000920_230--Hb_002592_020 Hb_002600_120 Hb_002600_120 Hb_000103_070--Hb_002600_120 Hb_000103_070--Hb_000003_280 Hb_003893_180 Hb_003893_180 Hb_000103_070--Hb_003893_180 Hb_002781_040 Hb_002781_040 Hb_000103_070--Hb_002781_040 Hb_006002_050 Hb_006002_050 Hb_000103_070--Hb_006002_050 Hb_006788_110 Hb_006788_110 Hb_000103_070--Hb_006788_110 Hb_132840_150 Hb_132840_150 Hb_000003_210--Hb_132840_150 Hb_005253_020 Hb_005253_020 Hb_000003_210--Hb_005253_020 Hb_000003_210--Hb_000190_170 Hb_001159_230 Hb_001159_230 Hb_000003_210--Hb_001159_230 Hb_000003_210--Hb_007811_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0551761 0.199658 3.00645 6.99156 0 0.038753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201951 0.555506 0 0.260355 1.99649

CAGE analysis