Hb_132840_150

Information

Type -
Description -
Location Contig132840: 104417-106089
Sequence    

Annotation

kegg
ID rcu:RCOM_1339600
description RNA-binding region-containing protein, putative
nr
ID XP_002515069.1
description RNA-binding region-containing protein, putative [Ricinus communis]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID B9RNJ8
description RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1339600 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09365: 103719-106586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_150 0.0 - - RNA-binding region-containing protein, putative [Ricinus communis]
2 Hb_004117_090 0.1213064435 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
3 Hb_001105_120 0.1274353733 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
4 Hb_012518_080 0.1327711073 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
5 Hb_000190_170 0.1331827403 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
6 Hb_039222_010 0.1351882332 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
7 Hb_000003_210 0.1364794613 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
8 Hb_004435_020 0.1387507691 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
9 Hb_007218_040 0.1422602171 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
10 Hb_001140_300 0.1441933741 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
11 Hb_007632_070 0.1452493461 - - kinase, putative [Ricinus communis]
12 Hb_000003_750 0.1458990372 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
13 Hb_010889_010 0.1464390814 - - PREDICTED: myosin-12 [Jatropha curcas]
14 Hb_000735_020 0.1466122533 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
15 Hb_003097_130 0.1476616063 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010381_100 0.1495331607 - - Phospholipase D epsilon [Morus notabilis]
17 Hb_007811_020 0.1523534758 - - PREDICTED: expansin-A6 [Jatropha curcas]
18 Hb_001287_090 0.1535780415 - - Endoglucanase 4 [Aegilops tauschii]
19 Hb_005675_050 0.1536272816 - - alpha-glucosidase, putative [Ricinus communis]
20 Hb_002045_210 0.1548606397 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]

Gene co-expression network

sample Hb_132840_150 Hb_132840_150 Hb_004117_090 Hb_004117_090 Hb_132840_150--Hb_004117_090 Hb_001105_120 Hb_001105_120 Hb_132840_150--Hb_001105_120 Hb_012518_080 Hb_012518_080 Hb_132840_150--Hb_012518_080 Hb_000190_170 Hb_000190_170 Hb_132840_150--Hb_000190_170 Hb_039222_010 Hb_039222_010 Hb_132840_150--Hb_039222_010 Hb_000003_210 Hb_000003_210 Hb_132840_150--Hb_000003_210 Hb_005496_040 Hb_005496_040 Hb_004117_090--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_004117_090--Hb_000342_040 Hb_001544_090 Hb_001544_090 Hb_004117_090--Hb_001544_090 Hb_005976_110 Hb_005976_110 Hb_004117_090--Hb_005976_110 Hb_004117_090--Hb_000190_170 Hb_000032_420 Hb_000032_420 Hb_004117_090--Hb_000032_420 Hb_017908_010 Hb_017908_010 Hb_001105_120--Hb_017908_010 Hb_000417_090 Hb_000417_090 Hb_001105_120--Hb_000417_090 Hb_001105_120--Hb_000190_170 Hb_001105_120--Hb_004117_090 Hb_010381_100 Hb_010381_100 Hb_001105_120--Hb_010381_100 Hb_000735_020 Hb_000735_020 Hb_012518_080--Hb_000735_020 Hb_002292_080 Hb_002292_080 Hb_012518_080--Hb_002292_080 Hb_001085_190 Hb_001085_190 Hb_012518_080--Hb_001085_190 Hb_000303_060 Hb_000303_060 Hb_012518_080--Hb_000303_060 Hb_033312_070 Hb_033312_070 Hb_012518_080--Hb_033312_070 Hb_011918_070 Hb_011918_070 Hb_012518_080--Hb_011918_070 Hb_002411_090 Hb_002411_090 Hb_000190_170--Hb_002411_090 Hb_000190_170--Hb_039222_010 Hb_000190_170--Hb_001544_090 Hb_007811_020 Hb_007811_020 Hb_000190_170--Hb_007811_020 Hb_001095_020 Hb_001095_020 Hb_000190_170--Hb_001095_020 Hb_003894_110 Hb_003894_110 Hb_039222_010--Hb_003894_110 Hb_000005_240 Hb_000005_240 Hb_039222_010--Hb_000005_240 Hb_007218_040 Hb_007218_040 Hb_039222_010--Hb_007218_040 Hb_000483_450 Hb_000483_450 Hb_039222_010--Hb_000483_450 Hb_039222_010--Hb_002411_090 Hb_001021_120 Hb_001021_120 Hb_039222_010--Hb_001021_120 Hb_003583_010 Hb_003583_010 Hb_000003_210--Hb_003583_010 Hb_005253_020 Hb_005253_020 Hb_000003_210--Hb_005253_020 Hb_000003_210--Hb_000190_170 Hb_001159_230 Hb_001159_230 Hb_000003_210--Hb_001159_230 Hb_000003_210--Hb_007811_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0255097 0.0513379 1.19861 1.72142 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0585519 0 0.0840617 0.148586 0.653529

CAGE analysis