Hb_039222_010

Information

Type -
Description -
Location Contig39222: 7-411
Sequence    

Annotation

kegg
ID tcc:TCM_027285
description hypothetical protein
nr
ID XP_012073126.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061GFU3
description Uncharacterized protein OS=Theobroma cacao GN=TCM_027285 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039222_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
2 Hb_003894_110 0.0855082702 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
3 Hb_000005_240 0.0862630724 - - Shugoshin-1, putative [Ricinus communis]
4 Hb_007218_040 0.0862717235 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
5 Hb_000483_450 0.0893289859 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
6 Hb_002411_090 0.0895631954 - - PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
7 Hb_001021_120 0.0934444961 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
8 Hb_000009_270 0.0938091043 - - Calmodulin, putative [Ricinus communis]
9 Hb_000190_170 0.095533121 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
10 Hb_000134_130 0.0983573793 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
11 Hb_098315_060 0.098577421 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
12 Hb_111985_100 0.1009510391 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_004202_020 0.1023654274 - - conserved hypothetical protein [Ricinus communis]
14 Hb_152910_050 0.1032627789 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
15 Hb_004435_020 0.1032950964 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
16 Hb_007811_020 0.1045585827 - - PREDICTED: expansin-A6 [Jatropha curcas]
17 Hb_040852_010 0.1052622232 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001007_020 0.1061042213 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
19 Hb_003376_020 0.1069559651 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001047_090 0.1070121237 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]

Gene co-expression network

sample Hb_039222_010 Hb_039222_010 Hb_003894_110 Hb_003894_110 Hb_039222_010--Hb_003894_110 Hb_000005_240 Hb_000005_240 Hb_039222_010--Hb_000005_240 Hb_007218_040 Hb_007218_040 Hb_039222_010--Hb_007218_040 Hb_000483_450 Hb_000483_450 Hb_039222_010--Hb_000483_450 Hb_002411_090 Hb_002411_090 Hb_039222_010--Hb_002411_090 Hb_001021_120 Hb_001021_120 Hb_039222_010--Hb_001021_120 Hb_040852_010 Hb_040852_010 Hb_003894_110--Hb_040852_010 Hb_152910_050 Hb_152910_050 Hb_003894_110--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_003894_110--Hb_098315_060 Hb_000134_130 Hb_000134_130 Hb_003894_110--Hb_000134_130 Hb_003376_020 Hb_003376_020 Hb_003894_110--Hb_003376_020 Hb_004202_020 Hb_004202_020 Hb_003894_110--Hb_004202_020 Hb_009486_050 Hb_009486_050 Hb_000005_240--Hb_009486_050 Hb_000005_240--Hb_002411_090 Hb_001080_190 Hb_001080_190 Hb_000005_240--Hb_001080_190 Hb_000005_240--Hb_001021_120 Hb_001079_060 Hb_001079_060 Hb_000005_240--Hb_001079_060 Hb_001140_300 Hb_001140_300 Hb_007218_040--Hb_001140_300 Hb_001396_030 Hb_001396_030 Hb_007218_040--Hb_001396_030 Hb_000112_080 Hb_000112_080 Hb_007218_040--Hb_000112_080 Hb_168918_010 Hb_168918_010 Hb_007218_040--Hb_168918_010 Hb_007811_020 Hb_007811_020 Hb_007218_040--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_007218_040--Hb_004435_020 Hb_000483_450--Hb_004202_020 Hb_004137_040 Hb_004137_040 Hb_000483_450--Hb_004137_040 Hb_000028_190 Hb_000028_190 Hb_000483_450--Hb_000028_190 Hb_002221_060 Hb_002221_060 Hb_000483_450--Hb_002221_060 Hb_000483_450--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_000483_450--Hb_000392_110 Hb_002411_090--Hb_009486_050 Hb_000190_170 Hb_000190_170 Hb_002411_090--Hb_000190_170 Hb_002411_090--Hb_001080_190 Hb_002411_090--Hb_001021_120 Hb_000009_270 Hb_000009_270 Hb_001021_120--Hb_000009_270 Hb_031321_020 Hb_031321_020 Hb_001021_120--Hb_031321_020 Hb_001021_120--Hb_000134_130 Hb_007922_030 Hb_007922_030 Hb_001021_120--Hb_007922_030 Hb_001021_120--Hb_152910_050 Hb_001021_120--Hb_098315_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.318407 8.82977 11.1848 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.194603 0 0 0.588063 5.39544

CAGE analysis