Hb_010381_100

Information

Type -
Description -
Location Contig10381: 88401-94342
Sequence    

Annotation

kegg
ID rcu:RCOM_0312720
description phospholipase d, putative (EC:3.1.4.4)
nr
ID XP_010106671.1
description Phospholipase D epsilon [Morus notabilis]
swissprot
ID Q9C888
description Phospholipase D epsilon OS=Arabidopsis thaliana GN=PLDEPSILON PE=3 SV=1
trembl
ID W9S5H0
description Phospholipase D epsilon OS=Morus notabilis GN=L484_004542 PE=4 SV=1
Gene Ontology
ID GO:0003824
description phospholipase d epsilon

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01432: 88130-88653 , PASA_asmbl_01433: 91376-94156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_100 0.0 - - Phospholipase D epsilon [Morus notabilis]
2 Hb_000527_050 0.1110173056 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010889_010 0.1272268376 - - PREDICTED: myosin-12 [Jatropha curcas]
4 Hb_004117_090 0.1343538741 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
5 Hb_000003_750 0.1413473903 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
6 Hb_003992_280 0.1442037844 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
7 Hb_001828_110 0.1478825343 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
8 Hb_000300_190 0.1494020393 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
9 Hb_003728_110 0.1494179543 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
10 Hb_132840_150 0.1495331607 - - RNA-binding region-containing protein, putative [Ricinus communis]
11 Hb_000025_160 0.1496784788 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
12 Hb_001085_190 0.1499671503 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
13 Hb_021065_010 0.1543938375 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
14 Hb_001157_050 0.1545091136 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
15 Hb_008686_010 0.1552930418 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010690_010 0.1554978808 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
17 Hb_005496_040 0.1561074407 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
18 Hb_001105_120 0.1562986903 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
19 Hb_003813_090 0.156398163 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
20 Hb_003935_040 0.157685153 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]

Gene co-expression network

sample Hb_010381_100 Hb_010381_100 Hb_000527_050 Hb_000527_050 Hb_010381_100--Hb_000527_050 Hb_010889_010 Hb_010889_010 Hb_010381_100--Hb_010889_010 Hb_004117_090 Hb_004117_090 Hb_010381_100--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_010381_100--Hb_000003_750 Hb_003992_280 Hb_003992_280 Hb_010381_100--Hb_003992_280 Hb_001828_110 Hb_001828_110 Hb_010381_100--Hb_001828_110 Hb_021065_010 Hb_021065_010 Hb_000527_050--Hb_021065_010 Hb_000527_050--Hb_001828_110 Hb_001157_050 Hb_001157_050 Hb_000527_050--Hb_001157_050 Hb_000418_170 Hb_000418_170 Hb_000527_050--Hb_000418_170 Hb_001366_290 Hb_001366_290 Hb_000527_050--Hb_001366_290 Hb_010889_010--Hb_004117_090 Hb_003055_090 Hb_003055_090 Hb_010889_010--Hb_003055_090 Hb_003813_090 Hb_003813_090 Hb_010889_010--Hb_003813_090 Hb_005496_040 Hb_005496_040 Hb_010889_010--Hb_005496_040 Hb_003728_110 Hb_003728_110 Hb_010889_010--Hb_003728_110 Hb_004117_090--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_004117_090--Hb_000342_040 Hb_001544_090 Hb_001544_090 Hb_004117_090--Hb_001544_090 Hb_005976_110 Hb_005976_110 Hb_004117_090--Hb_005976_110 Hb_000190_170 Hb_000190_170 Hb_004117_090--Hb_000190_170 Hb_000032_420 Hb_000032_420 Hb_004117_090--Hb_000032_420 Hb_011918_070 Hb_011918_070 Hb_000003_750--Hb_011918_070 Hb_000003_750--Hb_001157_050 Hb_003750_120 Hb_003750_120 Hb_000003_750--Hb_003750_120 Hb_000003_750--Hb_005496_040 Hb_070498_010 Hb_070498_010 Hb_000003_750--Hb_070498_010 Hb_015048_020 Hb_015048_020 Hb_000003_750--Hb_015048_020 Hb_000300_190 Hb_000300_190 Hb_003992_280--Hb_000300_190 Hb_003992_280--Hb_003728_110 Hb_003055_080 Hb_003055_080 Hb_003992_280--Hb_003055_080 Hb_002965_060 Hb_002965_060 Hb_003992_280--Hb_002965_060 Hb_001195_550 Hb_001195_550 Hb_003992_280--Hb_001195_550 Hb_000020_050 Hb_000020_050 Hb_003992_280--Hb_000020_050 Hb_003573_050 Hb_003573_050 Hb_001828_110--Hb_003573_050 Hb_003747_250 Hb_003747_250 Hb_001828_110--Hb_003747_250 Hb_000914_140 Hb_000914_140 Hb_001828_110--Hb_000914_140 Hb_001307_020 Hb_001307_020 Hb_001828_110--Hb_001307_020 Hb_001828_110--Hb_000300_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.147026 0.774146 1.02875 0.00599777 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.027172 0.0106913 0.0818883 0.0847794 0.296867

CAGE analysis