Hb_002965_060

Information

Type -
Description -
Location Contig2965: 47232-50373
Sequence    

Annotation

kegg
ID rcu:RCOM_0999340
description Protein COBRA precursor, putative
nr
ID XP_002519175.1
description Protein COBRA precursor, putative [Ricinus communis]
swissprot
ID Q8GZ17
description COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2
trembl
ID B9RZK6
description Protein COBRA, putative OS=Ricinus communis GN=RCOM_0999340 PE=4 SV=1
Gene Ontology
ID GO:0031225
description cobra-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_060 0.0 - - Protein COBRA precursor, putative [Ricinus communis]
2 Hb_000300_190 0.0975365118 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
3 Hb_003055_080 0.1011431784 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
4 Hb_003992_280 0.1234904137 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
5 Hb_006120_130 0.1333045755 - - -
6 Hb_000375_260 0.1376113877 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
7 Hb_003728_110 0.140255455 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
8 Hb_000289_020 0.1423645085 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
9 Hb_000975_090 0.1423868766 - - Zeamatin precursor, putative [Ricinus communis]
10 Hb_003992_020 0.1434508433 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
11 Hb_043552_010 0.1445670504 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
12 Hb_001828_110 0.1460692994 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
13 Hb_000098_270 0.1476755249 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
14 Hb_008725_100 0.1479039402 - - PREDICTED: histone H1-like [Jatropha curcas]
15 Hb_007126_010 0.1488189905 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
16 Hb_000878_120 0.1500537331 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
17 Hb_006916_120 0.1522119984 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
18 Hb_003935_040 0.154735161 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
19 Hb_002028_270 0.1551895025 - - Pectinesterase-1 precursor, putative [Ricinus communis]
20 Hb_006351_030 0.1564771906 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]

Gene co-expression network

sample Hb_002965_060 Hb_002965_060 Hb_000300_190 Hb_000300_190 Hb_002965_060--Hb_000300_190 Hb_003055_080 Hb_003055_080 Hb_002965_060--Hb_003055_080 Hb_003992_280 Hb_003992_280 Hb_002965_060--Hb_003992_280 Hb_006120_130 Hb_006120_130 Hb_002965_060--Hb_006120_130 Hb_000375_260 Hb_000375_260 Hb_002965_060--Hb_000375_260 Hb_003728_110 Hb_003728_110 Hb_002965_060--Hb_003728_110 Hb_000300_190--Hb_003992_280 Hb_000300_190--Hb_003055_080 Hb_000300_190--Hb_006120_130 Hb_002639_050 Hb_002639_050 Hb_000300_190--Hb_002639_050 Hb_000300_190--Hb_000375_260 Hb_000878_120 Hb_000878_120 Hb_003055_080--Hb_000878_120 Hb_001195_550 Hb_001195_550 Hb_003055_080--Hb_001195_550 Hb_006351_030 Hb_006351_030 Hb_003055_080--Hb_006351_030 Hb_003055_080--Hb_000375_260 Hb_003992_280--Hb_003728_110 Hb_003992_280--Hb_003055_080 Hb_003992_280--Hb_001195_550 Hb_000020_050 Hb_000020_050 Hb_003992_280--Hb_000020_050 Hb_000289_020 Hb_000289_020 Hb_006120_130--Hb_000289_020 Hb_006120_130--Hb_000375_260 Hb_000862_050 Hb_000862_050 Hb_006120_130--Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_006120_130--Hb_008725_100 Hb_043552_010 Hb_043552_010 Hb_006120_130--Hb_043552_010 Hb_002028_270 Hb_002028_270 Hb_006120_130--Hb_002028_270 Hb_001159_090 Hb_001159_090 Hb_000375_260--Hb_001159_090 Hb_001709_090 Hb_001709_090 Hb_000375_260--Hb_001709_090 Hb_000375_260--Hb_043552_010 Hb_000375_260--Hb_002028_270 Hb_003992_020 Hb_003992_020 Hb_000375_260--Hb_003992_020 Hb_002292_080 Hb_002292_080 Hb_003728_110--Hb_002292_080 Hb_003606_050 Hb_003606_050 Hb_003728_110--Hb_003606_050 Hb_003935_040 Hb_003935_040 Hb_003728_110--Hb_003935_040 Hb_030685_010 Hb_030685_010 Hb_003728_110--Hb_030685_010 Hb_003055_090 Hb_003055_090 Hb_003728_110--Hb_003055_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0281195 0.779388 2.59593 3.44489 0 0.0412015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0197144 0.0465376 0.088522 0.450035 0.296046

CAGE analysis