Hb_030685_010

Information

Type -
Description -
Location Contig30685: 1799-3360
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32391: 1945-3788 , PASA_asmbl_32392: 1946-3788 , PASA_asmbl_32393: 2473-2650 , PASA_asmbl_32394: 2677-3122
cDNA
(Sanger)
(ID:Location)		 014_L02.ab1: 1946-3631 , 019_E10.ab1: 1945-3584 , 025_B20.ab1: 1946-3654 , 038_I23.ab1: 1945-3663 , 038_P16.ab1: 1945-3663 , 044_D18.ab1: 1980-3663 , 046_N02.ab1: 1945-3663

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030685_010 0.0 - - -
2 Hb_003540_120 0.1125552126 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_000093_090 0.1227281691 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
4 Hb_003728_110 0.123061671 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
5 Hb_001188_050 0.1239924757 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003055_080 0.1280956425 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
7 Hb_002749_040 0.1369552698 - - Ribosomal protein L6 family protein [Theobroma cacao]
8 Hb_000963_050 0.1373302503 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
9 Hb_155444_010 0.1380068588 - - -
10 Hb_074419_010 0.1400122904 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
11 Hb_001025_100 0.140718905 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
12 Hb_012395_050 0.1439063125 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
13 Hb_003606_050 0.1466599689 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
14 Hb_000679_250 0.1485947606 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
15 Hb_006351_030 0.1508225225 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
16 Hb_003935_040 0.152935896 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
17 Hb_000162_190 0.1531313921 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
18 Hb_003992_280 0.1542740869 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
19 Hb_186247_010 0.1554645533 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
20 Hb_002292_080 0.1555169527 - - transferase, transferring glycosyl groups, putative [Ricinus communis]

Gene co-expression network

sample Hb_030685_010 Hb_030685_010 Hb_003540_120 Hb_003540_120 Hb_030685_010--Hb_003540_120 Hb_000093_090 Hb_000093_090 Hb_030685_010--Hb_000093_090 Hb_003728_110 Hb_003728_110 Hb_030685_010--Hb_003728_110 Hb_001188_050 Hb_001188_050 Hb_030685_010--Hb_001188_050 Hb_003055_080 Hb_003055_080 Hb_030685_010--Hb_003055_080 Hb_002749_040 Hb_002749_040 Hb_030685_010--Hb_002749_040 Hb_001597_030 Hb_001597_030 Hb_003540_120--Hb_001597_030 Hb_003606_050 Hb_003606_050 Hb_003540_120--Hb_003606_050 Hb_003540_120--Hb_001188_050 Hb_001823_090 Hb_001823_090 Hb_003540_120--Hb_001823_090 Hb_002681_120 Hb_002681_120 Hb_003540_120--Hb_002681_120 Hb_002292_080 Hb_002292_080 Hb_000093_090--Hb_002292_080 Hb_000162_190 Hb_000162_190 Hb_000093_090--Hb_000162_190 Hb_000853_250 Hb_000853_250 Hb_000093_090--Hb_000853_250 Hb_003935_040 Hb_003935_040 Hb_000093_090--Hb_003935_040 Hb_001141_440 Hb_001141_440 Hb_000093_090--Hb_001141_440 Hb_003992_280 Hb_003992_280 Hb_003728_110--Hb_003992_280 Hb_003728_110--Hb_002292_080 Hb_003728_110--Hb_003606_050 Hb_003728_110--Hb_003935_040 Hb_003055_090 Hb_003055_090 Hb_003728_110--Hb_003055_090 Hb_186247_010 Hb_186247_010 Hb_001188_050--Hb_186247_010 Hb_001188_050--Hb_003606_050 Hb_000963_050 Hb_000963_050 Hb_001188_050--Hb_000963_050 Hb_000274_050 Hb_000274_050 Hb_001188_050--Hb_000274_050 Hb_000300_190 Hb_000300_190 Hb_003055_080--Hb_000300_190 Hb_002965_060 Hb_002965_060 Hb_003055_080--Hb_002965_060 Hb_000878_120 Hb_000878_120 Hb_003055_080--Hb_000878_120 Hb_001195_550 Hb_001195_550 Hb_003055_080--Hb_001195_550 Hb_006351_030 Hb_006351_030 Hb_003055_080--Hb_006351_030 Hb_000375_260 Hb_000375_260 Hb_003055_080--Hb_000375_260 Hb_155444_010 Hb_155444_010 Hb_002749_040--Hb_155444_010 Hb_012395_050 Hb_012395_050 Hb_002749_040--Hb_012395_050 Hb_000032_430 Hb_000032_430 Hb_002749_040--Hb_000032_430 Hb_002272_200 Hb_002272_200 Hb_002749_040--Hb_002272_200 Hb_002518_020 Hb_002518_020 Hb_002749_040--Hb_002518_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6688 42.5179 187.118 345.326 9.48918 20.7273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68942 2.60913 1.44377 60.4662 46.1695

CAGE analysis