Hb_186247_010

Information

Type -
Description -
Location Contig186247: 26-518
Sequence    

Annotation

kegg
ID pxb:103961017
description uridine 5'-monophosphate synthase-like
nr
ID XP_009371794.1
description PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
swissprot
ID Q9LDN2
description Uridine 5'-monophosphate synthase OS=Oryza sativa subsp. japonica GN=UMPS1 PE=2 SV=1
trembl
ID A0A0A9TAY6
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0005829
description uridine 5 -monophosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186247_010 0.0 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
2 Hb_002539_050 0.1032117499 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
3 Hb_001188_050 0.1058888632 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006829_070 0.1061253126 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
5 Hb_010315_100 0.13461037 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
6 Hb_004631_170 0.1347819284 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002026_020 0.1357663117 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
8 Hb_003430_080 0.1367894724 - - zinc finger protein, putative [Ricinus communis]
9 Hb_003540_120 0.1456366357 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_000424_030 0.1489087117 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000963_050 0.1490618204 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
12 Hb_012286_060 0.1498539549 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
13 Hb_012762_060 0.1508846021 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
14 Hb_000274_050 0.1518463312 - - Squalene monooxygenase, putative [Ricinus communis]
15 Hb_005245_140 0.1527326094 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
16 Hb_150440_010 0.1531653134 - - -
17 Hb_000740_090 0.1537364164 - - conserved hypothetical protein [Ricinus communis]
18 Hb_030685_010 0.1554645533 - - -
19 Hb_000581_030 0.1561854625 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003929_190 0.1573816765 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]

Gene co-expression network

sample Hb_186247_010 Hb_186247_010 Hb_002539_050 Hb_002539_050 Hb_186247_010--Hb_002539_050 Hb_001188_050 Hb_001188_050 Hb_186247_010--Hb_001188_050 Hb_006829_070 Hb_006829_070 Hb_186247_010--Hb_006829_070 Hb_010315_100 Hb_010315_100 Hb_186247_010--Hb_010315_100 Hb_004631_170 Hb_004631_170 Hb_186247_010--Hb_004631_170 Hb_002026_020 Hb_002026_020 Hb_186247_010--Hb_002026_020 Hb_003929_190 Hb_003929_190 Hb_002539_050--Hb_003929_190 Hb_000363_180 Hb_000363_180 Hb_002539_050--Hb_000363_180 Hb_002539_050--Hb_010315_100 Hb_148346_010 Hb_148346_010 Hb_002539_050--Hb_148346_010 Hb_002539_050--Hb_004631_170 Hb_003606_050 Hb_003606_050 Hb_001188_050--Hb_003606_050 Hb_000963_050 Hb_000963_050 Hb_001188_050--Hb_000963_050 Hb_003540_120 Hb_003540_120 Hb_001188_050--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_001188_050--Hb_030685_010 Hb_000274_050 Hb_000274_050 Hb_001188_050--Hb_000274_050 Hb_012762_060 Hb_012762_060 Hb_006829_070--Hb_012762_060 Hb_006829_070--Hb_002026_020 Hb_003680_030 Hb_003680_030 Hb_006829_070--Hb_003680_030 Hb_000424_030 Hb_000424_030 Hb_006829_070--Hb_000424_030 Hb_002217_320 Hb_002217_320 Hb_006829_070--Hb_002217_320 Hb_006925_050 Hb_006925_050 Hb_006829_070--Hb_006925_050 Hb_010315_100--Hb_000363_180 Hb_002235_370 Hb_002235_370 Hb_010315_100--Hb_002235_370 Hb_003849_120 Hb_003849_120 Hb_010315_100--Hb_003849_120 Hb_000196_010 Hb_000196_010 Hb_010315_100--Hb_000196_010 Hb_150440_010 Hb_150440_010 Hb_004631_170--Hb_150440_010 Hb_004631_170--Hb_006829_070 Hb_004631_170--Hb_000424_030 Hb_004631_170--Hb_002026_020 Hb_001328_050 Hb_001328_050 Hb_002026_020--Hb_001328_050 Hb_000030_020 Hb_000030_020 Hb_002026_020--Hb_000030_020 Hb_002026_020--Hb_012762_060 Hb_002900_150 Hb_002900_150 Hb_002026_020--Hb_002900_150 Hb_002026_020--Hb_003680_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.39458 31.8221 71.887 104.732 13.0208 9.40368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.63126 3.36592 2.41783 21.6737 20.5872

CAGE analysis