Hb_150440_010

Information

Type -
Description -
Location Contig150440: 1965-3176
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12670: 2853-3141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150440_010 0.0 - - -
2 Hb_004631_170 0.0777347009 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002920_010 0.1246580507 - - PREDICTED: sulfiredoxin, chloroplastic/mitochondrial [Populus euphratica]
4 Hb_002539_050 0.13752703 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
5 Hb_000424_030 0.1376563488 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006829_070 0.1425500097 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
7 Hb_000603_020 0.1525395065 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
8 Hb_186247_010 0.1531653134 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
9 Hb_000271_220 0.1536240144 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
10 Hb_005941_030 0.1550898156 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
11 Hb_000963_050 0.1588723536 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
12 Hb_005245_140 0.160430792 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
13 Hb_014497_040 0.1621702222 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
14 Hb_000482_120 0.1632930008 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
15 Hb_003929_190 0.1676657152 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
16 Hb_010315_100 0.1689963875 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
17 Hb_002026_020 0.1697606545 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
18 Hb_001188_050 0.1700171872 - - conserved hypothetical protein [Ricinus communis]
19 Hb_020805_040 0.1706388705 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
20 Hb_000622_330 0.1708114479 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]

Gene co-expression network

sample Hb_150440_010 Hb_150440_010 Hb_004631_170 Hb_004631_170 Hb_150440_010--Hb_004631_170 Hb_002920_010 Hb_002920_010 Hb_150440_010--Hb_002920_010 Hb_002539_050 Hb_002539_050 Hb_150440_010--Hb_002539_050 Hb_000424_030 Hb_000424_030 Hb_150440_010--Hb_000424_030 Hb_006829_070 Hb_006829_070 Hb_150440_010--Hb_006829_070 Hb_000603_020 Hb_000603_020 Hb_150440_010--Hb_000603_020 Hb_004631_170--Hb_006829_070 Hb_004631_170--Hb_002539_050 Hb_004631_170--Hb_000424_030 Hb_002026_020 Hb_002026_020 Hb_004631_170--Hb_002026_020 Hb_186247_010 Hb_186247_010 Hb_004631_170--Hb_186247_010 Hb_002920_010--Hb_004631_170 Hb_002920_010--Hb_000603_020 Hb_002920_010--Hb_000424_030 Hb_014497_040 Hb_014497_040 Hb_002920_010--Hb_014497_040 Hb_098795_030 Hb_098795_030 Hb_002920_010--Hb_098795_030 Hb_002539_050--Hb_186247_010 Hb_003929_190 Hb_003929_190 Hb_002539_050--Hb_003929_190 Hb_000363_180 Hb_000363_180 Hb_002539_050--Hb_000363_180 Hb_010315_100 Hb_010315_100 Hb_002539_050--Hb_010315_100 Hb_148346_010 Hb_148346_010 Hb_002539_050--Hb_148346_010 Hb_000424_030--Hb_006829_070 Hb_000424_030--Hb_000603_020 Hb_000271_220 Hb_000271_220 Hb_000424_030--Hb_000271_220 Hb_002217_320 Hb_002217_320 Hb_000424_030--Hb_002217_320 Hb_000622_330 Hb_000622_330 Hb_000424_030--Hb_000622_330 Hb_006925_050 Hb_006925_050 Hb_000424_030--Hb_006925_050 Hb_012762_060 Hb_012762_060 Hb_006829_070--Hb_012762_060 Hb_006829_070--Hb_002026_020 Hb_003680_030 Hb_003680_030 Hb_006829_070--Hb_003680_030 Hb_006829_070--Hb_002217_320 Hb_006829_070--Hb_006925_050 Hb_000603_020--Hb_000271_220 Hb_003001_130 Hb_003001_130 Hb_000603_020--Hb_003001_130 Hb_012807_150 Hb_012807_150 Hb_000603_020--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85957 16.6005 29.371 61.7862 5.18243 11.2718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.1904 2.87496 0 11.3262 20.9838

CAGE analysis