Hb_014497_040

Information

Type -
Description -
Location Contig14497: 32094-32525
Sequence    

Annotation

kegg
ID rcu:RCOM_1602310
description hypothetical protein
nr
ID XP_012073545.1
description PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
swissprot
ID Q9C9K2
description Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1
trembl
ID A0A067KKW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08018 PE=4 SV=1
Gene Ontology
ID GO:0043234
description calvin cycle protein cp12- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11693: 31841-32562
cDNA
(Sanger)
(ID:Location)		 033_F01.ab1: 31953-32544 , 040_J08.ab1: 31841-32530 , 042_N24.ab1: 31944-32544

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014497_040 0.0 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
2 Hb_005941_030 0.1138434631 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
3 Hb_000012_400 0.1345701613 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
4 Hb_003029_060 0.1416441411 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
5 Hb_010812_110 0.1489527223 - - putative plant disease resistance family protein [Populus trichocarpa]
6 Hb_000562_100 0.1515938889 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
7 Hb_004631_170 0.1519244984 - - conserved hypothetical protein [Ricinus communis]
8 Hb_014361_090 0.1547396381 - - acyl-CoA binding protein 3A [Vernicia fordii]
9 Hb_020586_010 0.1550396955 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
10 Hb_011828_010 0.1589803267 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
11 Hb_000003_310 0.1591220678 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
12 Hb_002367_110 0.1603642507 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
13 Hb_004409_030 0.1604712 - - Glutamine synthetase 1,4 [Theobroma cacao]
14 Hb_000997_070 0.1611927143 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
15 Hb_003929_190 0.1619850759 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
16 Hb_150440_010 0.1621702222 - - -
17 Hb_004449_090 0.164232746 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
18 Hb_001004_120 0.165104315 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
19 Hb_000926_340 0.1675603402 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_160405_010 0.1687685177 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_014497_040 Hb_014497_040 Hb_005941_030 Hb_005941_030 Hb_014497_040--Hb_005941_030 Hb_000012_400 Hb_000012_400 Hb_014497_040--Hb_000012_400 Hb_003029_060 Hb_003029_060 Hb_014497_040--Hb_003029_060 Hb_010812_110 Hb_010812_110 Hb_014497_040--Hb_010812_110 Hb_000562_100 Hb_000562_100 Hb_014497_040--Hb_000562_100 Hb_004631_170 Hb_004631_170 Hb_014497_040--Hb_004631_170 Hb_000071_160 Hb_000071_160 Hb_005941_030--Hb_000071_160 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_005941_030--Hb_003029_060 Hb_014361_090 Hb_014361_090 Hb_005941_030--Hb_014361_090 Hb_009838_020 Hb_009838_020 Hb_005941_030--Hb_009838_020 Hb_003849_120 Hb_003849_120 Hb_000012_400--Hb_003849_120 Hb_010050_020 Hb_010050_020 Hb_000012_400--Hb_010050_020 Hb_010407_030 Hb_010407_030 Hb_000012_400--Hb_010407_030 Hb_000012_400--Hb_000562_100 Hb_001195_310 Hb_001195_310 Hb_000012_400--Hb_001195_310 Hb_001009_150 Hb_001009_150 Hb_000012_400--Hb_001009_150 Hb_003929_190 Hb_003929_190 Hb_003029_060--Hb_003929_190 Hb_003029_060--Hb_009838_020 Hb_003029_060--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_003029_060--Hb_000977_290 Hb_001474_040 Hb_001474_040 Hb_010812_110--Hb_001474_040 Hb_000844_030 Hb_000844_030 Hb_010812_110--Hb_000844_030 Hb_026740_020 Hb_026740_020 Hb_010812_110--Hb_026740_020 Hb_000226_070 Hb_000226_070 Hb_010812_110--Hb_000226_070 Hb_010812_110--Hb_005941_030 Hb_012353_040 Hb_012353_040 Hb_000562_100--Hb_012353_040 Hb_000997_070 Hb_000997_070 Hb_000562_100--Hb_000997_070 Hb_000562_100--Hb_003849_120 Hb_004052_180 Hb_004052_180 Hb_000562_100--Hb_004052_180 Hb_000866_070 Hb_000866_070 Hb_000562_100--Hb_000866_070 Hb_150440_010 Hb_150440_010 Hb_004631_170--Hb_150440_010 Hb_006829_070 Hb_006829_070 Hb_004631_170--Hb_006829_070 Hb_002539_050 Hb_002539_050 Hb_004631_170--Hb_002539_050 Hb_000424_030 Hb_000424_030 Hb_004631_170--Hb_000424_030 Hb_002026_020 Hb_002026_020 Hb_004631_170--Hb_002026_020 Hb_186247_010 Hb_186247_010 Hb_004631_170--Hb_186247_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9046 67.0775 56.4059 217.509 36.1767 62.5184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3587 8.13626 1.10967 60.6192 78.141

CAGE analysis