Hb_003929_190

Information

Type -
Description -
Location Contig3929: 109559-113695
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22920g
description hypothetical protein
nr
ID XP_012084192.1
description PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
swissprot
ID Q8LEB6
description Probable receptor-like protein kinase At5g18500 OS=Arabidopsis thaliana GN=At5g18500 PE=2 SV=1
trembl
ID A0A067JVJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19081 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at5g18500

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39366: 109666-113856 , PASA_asmbl_39367: 109687-110337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_190 0.0 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
2 Hb_000012_400 0.116184396 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
3 Hb_002539_050 0.1212443978 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
4 Hb_003029_060 0.1214535783 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
5 Hb_005941_030 0.1383090515 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
6 Hb_000071_160 0.1405422368 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
7 Hb_000203_070 0.1434937419 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
8 Hb_001195_420 0.1465511713 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
9 Hb_010050_020 0.1473669549 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
10 Hb_006570_090 0.1486057997 - - tubulin beta chain, putative [Ricinus communis]
11 Hb_002681_120 0.1494187646 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
12 Hb_000274_050 0.1496980699 - - Squalene monooxygenase, putative [Ricinus communis]
13 Hb_002774_120 0.1515923062 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
14 Hb_000562_100 0.1538065961 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
15 Hb_001221_390 0.1545584605 - - Phospholipase C 4 precursor, putative [Ricinus communis]
16 Hb_000776_040 0.1560164304 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 [Jatropha curcas]
17 Hb_000236_160 0.15688635 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
18 Hb_012807_150 0.1572403774 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
19 Hb_186247_010 0.1573816765 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
20 Hb_000963_050 0.1580987382 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003929_190 Hb_003929_190 Hb_000012_400 Hb_000012_400 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003029_060 Hb_003029_060 Hb_003929_190--Hb_003029_060 Hb_005941_030 Hb_005941_030 Hb_003929_190--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_003929_190--Hb_000071_160 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070 Hb_003849_120 Hb_003849_120 Hb_000012_400--Hb_003849_120 Hb_010050_020 Hb_010050_020 Hb_000012_400--Hb_010050_020 Hb_010407_030 Hb_010407_030 Hb_000012_400--Hb_010407_030 Hb_000562_100 Hb_000562_100 Hb_000012_400--Hb_000562_100 Hb_001195_310 Hb_001195_310 Hb_000012_400--Hb_001195_310 Hb_001009_150 Hb_001009_150 Hb_000012_400--Hb_001009_150 Hb_186247_010 Hb_186247_010 Hb_002539_050--Hb_186247_010 Hb_000363_180 Hb_000363_180 Hb_002539_050--Hb_000363_180 Hb_010315_100 Hb_010315_100 Hb_002539_050--Hb_010315_100 Hb_148346_010 Hb_148346_010 Hb_002539_050--Hb_148346_010 Hb_004631_170 Hb_004631_170 Hb_002539_050--Hb_004631_170 Hb_003029_060--Hb_005941_030 Hb_009838_020 Hb_009838_020 Hb_003029_060--Hb_009838_020 Hb_014497_040 Hb_014497_040 Hb_003029_060--Hb_014497_040 Hb_003029_060--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_003029_060--Hb_000977_290 Hb_005941_030--Hb_000071_160 Hb_005941_030--Hb_014497_040 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_014361_090 Hb_014361_090 Hb_005941_030--Hb_014361_090 Hb_005941_030--Hb_009838_020 Hb_000071_160--Hb_014361_090 Hb_000071_160--Hb_011828_010 Hb_000271_220 Hb_000271_220 Hb_000071_160--Hb_000271_220 Hb_004899_340 Hb_004899_340 Hb_000071_160--Hb_004899_340 Hb_000776_040 Hb_000776_040 Hb_000203_070--Hb_000776_040 Hb_001178_090 Hb_001178_090 Hb_000203_070--Hb_001178_090 Hb_034507_060 Hb_034507_060 Hb_000203_070--Hb_034507_060 Hb_005333_080 Hb_005333_080 Hb_000203_070--Hb_005333_080 Hb_000085_380 Hb_000085_380 Hb_000203_070--Hb_000085_380 Hb_012760_090 Hb_012760_090 Hb_000203_070--Hb_012760_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06982 8.98914 17.7026 38.5173 3.84948 5.01969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.429398 0.402231 1.0703 11.7108 13.9418

CAGE analysis