Hb_000071_160

Information

Type -
Description -
Location Contig71: 192444-197889
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12550g
description POPTRDRAFT_738961; calmodulin-binding family protein
nr
ID XP_012065034.1
description PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID A0A067L728
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05703 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55194: 192281-197529 , PASA_asmbl_55195: 192281-197529 , PASA_asmbl_55197: 197586-197693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_160 0.0 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
2 Hb_005941_030 0.1082182926 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
3 Hb_014361_090 0.1251707677 - - acyl-CoA binding protein 3A [Vernicia fordii]
4 Hb_011828_010 0.1340899933 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
5 Hb_000271_220 0.1375428271 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
6 Hb_004899_340 0.1395722487 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_003929_190 0.1405422368 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
8 Hb_003006_090 0.1436377519 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
9 Hb_003102_030 0.1443037743 - - PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
10 Hb_004330_020 0.1467431738 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
11 Hb_000011_070 0.147873171 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
12 Hb_001269_520 0.1483553358 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
13 Hb_009838_020 0.1487554749 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
14 Hb_000347_190 0.1506049753 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
15 Hb_000603_020 0.1527198118 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
16 Hb_002488_010 0.1535576981 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
17 Hb_012807_150 0.1535620231 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
18 Hb_011021_010 0.154170078 - - kinase, putative [Ricinus communis]
19 Hb_005724_040 0.1552926241 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
20 Hb_002559_030 0.156261079 - - oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000071_160 Hb_000071_160 Hb_005941_030 Hb_005941_030 Hb_000071_160--Hb_005941_030 Hb_014361_090 Hb_014361_090 Hb_000071_160--Hb_014361_090 Hb_011828_010 Hb_011828_010 Hb_000071_160--Hb_011828_010 Hb_000271_220 Hb_000271_220 Hb_000071_160--Hb_000271_220 Hb_004899_340 Hb_004899_340 Hb_000071_160--Hb_004899_340 Hb_003929_190 Hb_003929_190 Hb_000071_160--Hb_003929_190 Hb_014497_040 Hb_014497_040 Hb_005941_030--Hb_014497_040 Hb_005941_030--Hb_011828_010 Hb_003029_060 Hb_003029_060 Hb_005941_030--Hb_003029_060 Hb_005941_030--Hb_014361_090 Hb_009838_020 Hb_009838_020 Hb_005941_030--Hb_009838_020 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_014361_090--Hb_004899_340 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_000138_060 Hb_000138_060 Hb_011828_010--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_011828_010--Hb_002289_150 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_116702_010 Hb_116702_010 Hb_011828_010--Hb_116702_010 Hb_011828_010--Hb_000271_220 Hb_000603_020 Hb_000603_020 Hb_000271_220--Hb_000603_020 Hb_012807_150 Hb_012807_150 Hb_000271_220--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000271_220--Hb_000283_140 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003006_090 Hb_003006_090 Hb_000271_220--Hb_003006_090 Hb_003001_130 Hb_003001_130 Hb_000271_220--Hb_003001_130 Hb_011021_010 Hb_011021_010 Hb_004899_340--Hb_011021_010 Hb_004899_340--Hb_001969_140 Hb_001623_080 Hb_001623_080 Hb_004899_340--Hb_001623_080 Hb_000959_300 Hb_000959_300 Hb_004899_340--Hb_000959_300 Hb_004899_340--Hb_009838_020 Hb_000012_400 Hb_000012_400 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003929_190--Hb_003029_060 Hb_003929_190--Hb_005941_030 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4585 58.6099 86.4191 183.048 21.3934 32.5465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.769472 1.47046 5.02579 32.8624 131.573

CAGE analysis