Hb_011021_010

Information

Type -
Description -
Location Contig11021: 8093-13140
Sequence    

Annotation

kegg
ID rcu:RCOM_1720210
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002521090.1
description kinase, putative [Ricinus communis]
swissprot
ID C0LGV0
description Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1
trembl
ID B9S521
description Kinase, putative OS=Ricinus communis GN=RCOM_1720210 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable lrr receptor-like serine threonine-protein kinase at5g48740

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03168: 8231-8613 , PASA_asmbl_03169: 9063-10734 , PASA_asmbl_03170: 9985-10734 , PASA_asmbl_03171: 10784-12026 , PASA_asmbl_03172: 12027-12522 , PASA_asmbl_03173: 12876-13080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011021_010 0.0 - - kinase, putative [Ricinus communis]
2 Hb_004899_340 0.0761820774 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
3 Hb_014361_090 0.1386958819 - - acyl-CoA binding protein 3A [Vernicia fordii]
4 Hb_001623_080 0.1390099041 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_001969_140 0.1452608015 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
6 Hb_001493_060 0.1502104811 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
7 Hb_000071_160 0.154170078 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
8 Hb_000193_210 0.158156605 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
9 Hb_001976_060 0.1619108462 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
10 Hb_009838_020 0.1626361828 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
11 Hb_005941_030 0.1670386784 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
12 Hb_000347_190 0.1673485555 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
13 Hb_030565_050 0.1686097302 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
14 Hb_000959_300 0.1703321327 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
15 Hb_001049_150 0.1744128896 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
16 Hb_020586_010 0.1775749385 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
17 Hb_000167_040 0.1803114413 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
18 Hb_002164_020 0.1812913777 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001221_190 0.1820212495 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
20 Hb_001195_090 0.1822746127 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_011021_010 Hb_011021_010 Hb_004899_340 Hb_004899_340 Hb_011021_010--Hb_004899_340 Hb_014361_090 Hb_014361_090 Hb_011021_010--Hb_014361_090 Hb_001623_080 Hb_001623_080 Hb_011021_010--Hb_001623_080 Hb_001969_140 Hb_001969_140 Hb_011021_010--Hb_001969_140 Hb_001493_060 Hb_001493_060 Hb_011021_010--Hb_001493_060 Hb_000071_160 Hb_000071_160 Hb_011021_010--Hb_000071_160 Hb_004899_340--Hb_001969_140 Hb_004899_340--Hb_001623_080 Hb_000959_300 Hb_000959_300 Hb_004899_340--Hb_000959_300 Hb_009838_020 Hb_009838_020 Hb_004899_340--Hb_009838_020 Hb_004899_340--Hb_014361_090 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_011828_010 Hb_011828_010 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_005941_030 Hb_005941_030 Hb_014361_090--Hb_005941_030 Hb_014361_090--Hb_000071_160 Hb_001049_150 Hb_001049_150 Hb_001623_080--Hb_001049_150 Hb_001976_060 Hb_001976_060 Hb_001623_080--Hb_001976_060 Hb_001623_080--Hb_000959_300 Hb_000665_190 Hb_000665_190 Hb_001623_080--Hb_000665_190 Hb_001195_310 Hb_001195_310 Hb_001969_140--Hb_001195_310 Hb_000167_040 Hb_000167_040 Hb_001969_140--Hb_000167_040 Hb_001216_110 Hb_001216_110 Hb_001969_140--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_001969_140--Hb_000679_040 Hb_011310_050 Hb_011310_050 Hb_001969_140--Hb_011310_050 Hb_001969_140--Hb_000959_300 Hb_002164_020 Hb_002164_020 Hb_001493_060--Hb_002164_020 Hb_000347_190 Hb_000347_190 Hb_001493_060--Hb_000347_190 Hb_002596_080 Hb_002596_080 Hb_001493_060--Hb_002596_080 Hb_009079_050 Hb_009079_050 Hb_001493_060--Hb_009079_050 Hb_000580_110 Hb_000580_110 Hb_001493_060--Hb_000580_110 Hb_001195_090 Hb_001195_090 Hb_001493_060--Hb_001195_090 Hb_000071_160--Hb_005941_030 Hb_000071_160--Hb_011828_010 Hb_000271_220 Hb_000271_220 Hb_000071_160--Hb_000271_220 Hb_000071_160--Hb_004899_340 Hb_003929_190 Hb_003929_190 Hb_000071_160--Hb_003929_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65273 1.61005 3.96287 14.0687 3.30443 1.61631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.217052 0.102482 0.566363 1.83362 9.28115

CAGE analysis