Hb_000665_190

Information

Type -
Description -
Location Contig665: 187234-192376
Sequence    

Annotation

kegg
ID rcu:RCOM_0923270
description hypothetical protein
nr
ID XP_002515482.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q03730
description Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML018C PE=1 SV=1
trembl
ID B9RP13
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0923270 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized vacuolar membrane protein yml018c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53217: 187269-192265 , PASA_asmbl_53218: 187319-188953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001049_150 0.0805803649 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
3 Hb_003994_300 0.0997438272 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027445_030 0.1017496935 - - F-box/LRR-repeat protein, putative [Ricinus communis]
5 Hb_003746_010 0.1052364378 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003540_080 0.1053080079 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
7 Hb_011926_040 0.1099248968 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_005192_010 0.1121930566 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
9 Hb_012339_010 0.1132548231 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003209_130 0.1135508437 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
11 Hb_009252_030 0.1139596258 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
12 Hb_000035_220 0.1142224342 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
13 Hb_004126_040 0.1150073256 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000399_060 0.1151118547 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
15 Hb_005977_100 0.1159772963 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
16 Hb_000058_110 0.1166811963 - - PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
17 Hb_014361_060 0.1178480452 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
18 Hb_000300_090 0.1181846292 - - catalytic, putative [Ricinus communis]
19 Hb_000140_340 0.1210956896 - - PREDICTED: protein ABIL1 [Jatropha curcas]
20 Hb_000703_100 0.1220710262 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000665_190 Hb_000665_190 Hb_001049_150 Hb_001049_150 Hb_000665_190--Hb_001049_150 Hb_003994_300 Hb_003994_300 Hb_000665_190--Hb_003994_300 Hb_027445_030 Hb_027445_030 Hb_000665_190--Hb_027445_030 Hb_003746_010 Hb_003746_010 Hb_000665_190--Hb_003746_010 Hb_003540_080 Hb_003540_080 Hb_000665_190--Hb_003540_080 Hb_011926_040 Hb_011926_040 Hb_000665_190--Hb_011926_040 Hb_001623_080 Hb_001623_080 Hb_001049_150--Hb_001623_080 Hb_001049_150--Hb_011926_040 Hb_026549_070 Hb_026549_070 Hb_001049_150--Hb_026549_070 Hb_000062_400 Hb_000062_400 Hb_001049_150--Hb_000062_400 Hb_001976_060 Hb_001976_060 Hb_001049_150--Hb_001976_060 Hb_003994_300--Hb_027445_030 Hb_007477_050 Hb_007477_050 Hb_003994_300--Hb_007477_050 Hb_003994_300--Hb_003746_010 Hb_003994_300--Hb_001049_150 Hb_000399_060 Hb_000399_060 Hb_003994_300--Hb_000399_060 Hb_001882_020 Hb_001882_020 Hb_027445_030--Hb_001882_020 Hb_000922_060 Hb_000922_060 Hb_027445_030--Hb_000922_060 Hb_005977_100 Hb_005977_100 Hb_027445_030--Hb_005977_100 Hb_008406_180 Hb_008406_180 Hb_027445_030--Hb_008406_180 Hb_001029_040 Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_009674_050 Hb_009674_050 Hb_003746_010--Hb_009674_050 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_000035_220 Hb_000035_220 Hb_003540_080--Hb_000035_220 Hb_000152_190 Hb_000152_190 Hb_003540_080--Hb_000152_190 Hb_002942_230 Hb_002942_230 Hb_003540_080--Hb_002942_230 Hb_000510_150 Hb_000510_150 Hb_003540_080--Hb_000510_150 Hb_000258_220 Hb_000258_220 Hb_003540_080--Hb_000258_220 Hb_000665_170 Hb_000665_170 Hb_003540_080--Hb_000665_170 Hb_009913_040 Hb_009913_040 Hb_011926_040--Hb_009913_040 Hb_011926_040--Hb_000399_060 Hb_006006_060 Hb_006006_060 Hb_011926_040--Hb_006006_060 Hb_000173_060 Hb_000173_060 Hb_011926_040--Hb_000173_060 Hb_174865_040 Hb_174865_040 Hb_011926_040--Hb_174865_040 Hb_000638_070 Hb_000638_070 Hb_011926_040--Hb_000638_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12799 5.3586 9.28477 23.5065 6.31347 5.32043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.19851 3.42488 4.0124 3.54769 13.0537

CAGE analysis