Hb_001623_080

Information

Type -
Description -
Location Contig1623: 43454-47495
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17460g
description POPTRDRAFT_414694; hypothetical protein
nr
ID AGL44401.1
description calcineurin-like phosphoesterase [Manihot esculenta]
swissprot
ID Q6TPH1
description Purple acid phosphatase 23 OS=Arabidopsis thaliana GN=PAP23 PE=1 SV=2
trembl
ID V9NC54
description Purple acid phosphatase OS=Manihot esculenta GN=PAP23 PE=2 SV=1
Gene Ontology
ID GO:0003993
description purple acid phosphatase 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14678: 43094-47474 , PASA_asmbl_14679: 43114-43493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_080 0.0 - - calcineurin-like phosphoesterase [Manihot esculenta]
2 Hb_001049_150 0.0875525738 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
3 Hb_001976_060 0.1054191886 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
4 Hb_004899_340 0.1164421492 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_000959_300 0.1275969251 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
6 Hb_000665_190 0.1382145156 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011021_010 0.1390099041 - - kinase, putative [Ricinus communis]
8 Hb_001969_140 0.1409492862 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
9 Hb_011926_040 0.141487259 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_002164_020 0.1447764164 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002053_050 0.1472788596 - - Kinesin heavy chain, putative [Ricinus communis]
12 Hb_001675_050 0.1476884746 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
13 Hb_004052_180 0.1494806298 - - PREDICTED: protein COBRA-like [Jatropha curcas]
14 Hb_026549_070 0.1507388411 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
15 Hb_009079_050 0.1511445222 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
16 Hb_001675_190 0.1514093482 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
17 Hb_000815_230 0.152061148 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009913_040 0.1524363646 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
19 Hb_000300_090 0.1530120019 - - catalytic, putative [Ricinus communis]
20 Hb_002097_100 0.1563651257 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001623_080 Hb_001623_080 Hb_001049_150 Hb_001049_150 Hb_001623_080--Hb_001049_150 Hb_001976_060 Hb_001976_060 Hb_001623_080--Hb_001976_060 Hb_004899_340 Hb_004899_340 Hb_001623_080--Hb_004899_340 Hb_000959_300 Hb_000959_300 Hb_001623_080--Hb_000959_300 Hb_000665_190 Hb_000665_190 Hb_001623_080--Hb_000665_190 Hb_011021_010 Hb_011021_010 Hb_001623_080--Hb_011021_010 Hb_001049_150--Hb_000665_190 Hb_011926_040 Hb_011926_040 Hb_001049_150--Hb_011926_040 Hb_026549_070 Hb_026549_070 Hb_001049_150--Hb_026549_070 Hb_000062_400 Hb_000062_400 Hb_001049_150--Hb_000062_400 Hb_001049_150--Hb_001976_060 Hb_001675_050 Hb_001675_050 Hb_001976_060--Hb_001675_050 Hb_001976_060--Hb_000062_400 Hb_000117_030 Hb_000117_030 Hb_001976_060--Hb_000117_030 Hb_001976_060--Hb_004899_340 Hb_004899_340--Hb_011021_010 Hb_001969_140 Hb_001969_140 Hb_004899_340--Hb_001969_140 Hb_004899_340--Hb_000959_300 Hb_009838_020 Hb_009838_020 Hb_004899_340--Hb_009838_020 Hb_014361_090 Hb_014361_090 Hb_004899_340--Hb_014361_090 Hb_002488_010 Hb_002488_010 Hb_000959_300--Hb_002488_010 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_000959_300--Hb_001969_140 Hb_002942_230 Hb_002942_230 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000167_040 Hb_000167_040 Hb_000959_300--Hb_000167_040 Hb_003994_300 Hb_003994_300 Hb_000665_190--Hb_003994_300 Hb_027445_030 Hb_027445_030 Hb_000665_190--Hb_027445_030 Hb_003746_010 Hb_003746_010 Hb_000665_190--Hb_003746_010 Hb_003540_080 Hb_003540_080 Hb_000665_190--Hb_003540_080 Hb_000665_190--Hb_011926_040 Hb_011021_010--Hb_014361_090 Hb_011021_010--Hb_001969_140 Hb_001493_060 Hb_001493_060 Hb_011021_010--Hb_001493_060 Hb_000071_160 Hb_000071_160 Hb_011021_010--Hb_000071_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.90132 2.32056 8.4867 18.8542 6.2684 3.76594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91939 0.865825 1.71267 2.63056 14.8834

CAGE analysis