Hb_000117_030

Information

Type -
Description -
Location Contig117: 25322-63577
Sequence    

Annotation

kegg
ID rcu:RCOM_0701540
description lipid binding protein, putative
nr
ID XP_012071440.1
description PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
swissprot
ID F4JSE7
description Protein ENHANCED DISEASE RESISTANCE 2 OS=Arabidopsis thaliana GN=EDR2 PE=2 SV=1
trembl
ID A0A067KUH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03981 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein enhanced disease resistance 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05257: 25405-63251 , PASA_asmbl_05258: 25373-42974 , PASA_asmbl_05262: 43057-43400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_030 0.0 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
2 Hb_000521_090 0.1137114338 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
3 Hb_009079_050 0.1182100267 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
4 Hb_003462_040 0.1322901277 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_012799_190 0.134194022 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
6 Hb_003226_250 0.139510671 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
7 Hb_000270_660 0.1417634565 - - purine permease, putative [Ricinus communis]
8 Hb_001493_060 0.1435017729 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
9 Hb_002820_150 0.149258629 - - zinc finger protein, putative [Ricinus communis]
10 Hb_007933_030 0.1494853298 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
11 Hb_026549_070 0.149864537 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
12 Hb_001976_060 0.1508272846 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
13 Hb_009252_010 0.1521356105 - - PREDICTED: kinesin light chain [Jatropha curcas]
14 Hb_000120_860 0.1524899196 - - nucellin, putative [Ricinus communis]
15 Hb_000834_080 0.1531652557 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
16 Hb_004242_170 0.1539615103 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
17 Hb_000062_400 0.154190189 - - conserved hypothetical protein [Ricinus communis]
18 Hb_116702_010 0.1542389468 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
19 Hb_001195_660 0.1562345178 - - metalloendopeptidase, putative [Ricinus communis]
20 Hb_002817_040 0.1564570386 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000117_030 Hb_000117_030 Hb_000521_090 Hb_000521_090 Hb_000117_030--Hb_000521_090 Hb_009079_050 Hb_009079_050 Hb_000117_030--Hb_009079_050 Hb_003462_040 Hb_003462_040 Hb_000117_030--Hb_003462_040 Hb_012799_190 Hb_012799_190 Hb_000117_030--Hb_012799_190 Hb_003226_250 Hb_003226_250 Hb_000117_030--Hb_003226_250 Hb_000270_660 Hb_000270_660 Hb_000117_030--Hb_000270_660 Hb_002681_080 Hb_002681_080 Hb_000521_090--Hb_002681_080 Hb_004735_020 Hb_004735_020 Hb_000521_090--Hb_004735_020 Hb_007933_030 Hb_007933_030 Hb_000521_090--Hb_007933_030 Hb_000062_400 Hb_000062_400 Hb_000521_090--Hb_000062_400 Hb_005375_110 Hb_005375_110 Hb_000521_090--Hb_005375_110 Hb_026549_070 Hb_026549_070 Hb_009079_050--Hb_026549_070 Hb_001369_100 Hb_001369_100 Hb_009079_050--Hb_001369_100 Hb_000139_300 Hb_000139_300 Hb_009079_050--Hb_000139_300 Hb_002817_040 Hb_002817_040 Hb_009079_050--Hb_002817_040 Hb_002164_020 Hb_002164_020 Hb_009079_050--Hb_002164_020 Hb_001195_660 Hb_001195_660 Hb_009079_050--Hb_001195_660 Hb_001369_010 Hb_001369_010 Hb_003462_040--Hb_001369_010 Hb_006750_010 Hb_006750_010 Hb_003462_040--Hb_006750_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_019516_060 Hb_019516_060 Hb_003462_040--Hb_019516_060 Hb_003462_040--Hb_003226_250 Hb_003462_040--Hb_001195_660 Hb_004242_170 Hb_004242_170 Hb_012799_190--Hb_004242_170 Hb_000834_080 Hb_000834_080 Hb_012799_190--Hb_000834_080 Hb_001053_020 Hb_001053_020 Hb_012799_190--Hb_001053_020 Hb_000336_200 Hb_000336_200 Hb_012799_190--Hb_000336_200 Hb_000976_130 Hb_000976_130 Hb_012799_190--Hb_000976_130 Hb_000762_110 Hb_000762_110 Hb_012799_190--Hb_000762_110 Hb_003226_250--Hb_001369_010 Hb_000808_150 Hb_000808_150 Hb_003226_250--Hb_000808_150 Hb_011310_040 Hb_011310_040 Hb_003226_250--Hb_011310_040 Hb_002759_220 Hb_002759_220 Hb_003226_250--Hb_002759_220 Hb_002596_080 Hb_002596_080 Hb_003226_250--Hb_002596_080 Hb_000120_860 Hb_000120_860 Hb_000270_660--Hb_000120_860 Hb_000000_310 Hb_000000_310 Hb_000270_660--Hb_000000_310 Hb_001009_260 Hb_001009_260 Hb_000270_660--Hb_001009_260 Hb_009674_050 Hb_009674_050 Hb_000270_660--Hb_009674_050 Hb_000270_660--Hb_002164_020 Hb_005116_140 Hb_005116_140 Hb_000270_660--Hb_005116_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08664 5.64492 9.14948 25.5333 5.83982 1.66979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.3308 2.01618 2.45468 3.39554 35.2647

CAGE analysis