Hb_005375_110

Information

Type -
Description -
Location Contig5375: 94387-95568
Sequence    

Annotation

kegg
ID rcu:RCOM_1339960
description cation efflux protein/ zinc transporter, putative (EC:1.3.1.74)
nr
ID AAR23528.1
description metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
swissprot
ID Q9ZT63
description Metal tolerance protein 1 OS=Arabidopsis thaliana GN=MTP1 PE=1 SV=2
trembl
ID Q6STE2
description Metal tolerance protein 1 OS=Populus trichocarpa x Populus deltoides GN=MTP1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47626: 94146-97091 , PASA_asmbl_47627: 95764-96411 , PASA_asmbl_47628: 95765-96999
cDNA
(Sanger)
(ID:Location)		 044_K15.ab1: 94919-97066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_110 0.0 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
2 Hb_004735_020 0.1164812343 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
3 Hb_000120_860 0.1231137462 - - nucellin, putative [Ricinus communis]
4 Hb_030959_010 0.1287230088 - - cullin, putative [Ricinus communis]
5 Hb_000521_090 0.1292428242 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
6 Hb_002681_080 0.1353363076 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
7 Hb_000056_090 0.1362260222 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]
8 Hb_005116_140 0.1372959169 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
9 Hb_016760_010 0.1410502729 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_004097_090 0.1460781547 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
11 Hb_000479_170 0.1462666472 - - chaperone clpb, putative [Ricinus communis]
12 Hb_006846_080 0.1465605343 - - calnexin, putative [Ricinus communis]
13 Hb_001421_090 0.1466382586 - - hypothetical protein RCOM_1278080 [Ricinus communis]
14 Hb_001882_020 0.1490331649 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
15 Hb_000200_350 0.1509911478 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
16 Hb_003682_070 0.1511212703 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
17 Hb_002399_020 0.1528479257 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
18 Hb_001009_260 0.1555003926 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
19 Hb_011364_020 0.1572382501 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
20 Hb_000599_230 0.1575196171 - - -

Gene co-expression network

sample Hb_005375_110 Hb_005375_110 Hb_004735_020 Hb_004735_020 Hb_005375_110--Hb_004735_020 Hb_000120_860 Hb_000120_860 Hb_005375_110--Hb_000120_860 Hb_030959_010 Hb_030959_010 Hb_005375_110--Hb_030959_010 Hb_000521_090 Hb_000521_090 Hb_005375_110--Hb_000521_090 Hb_002681_080 Hb_002681_080 Hb_005375_110--Hb_002681_080 Hb_000056_090 Hb_000056_090 Hb_005375_110--Hb_000056_090 Hb_001009_260 Hb_001009_260 Hb_004735_020--Hb_001009_260 Hb_004735_020--Hb_000120_860 Hb_003682_070 Hb_003682_070 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_010344_030 Hb_010344_030 Hb_004735_020--Hb_010344_030 Hb_130589_010 Hb_130589_010 Hb_004735_020--Hb_130589_010 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_000120_860--Hb_001009_260 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_000120_860--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_000120_860--Hb_005116_140 Hb_000120_860--Hb_003682_070 Hb_030959_010--Hb_005116_140 Hb_009252_010 Hb_009252_010 Hb_030959_010--Hb_009252_010 Hb_009674_050 Hb_009674_050 Hb_030959_010--Hb_009674_050 Hb_000417_170 Hb_000417_170 Hb_030959_010--Hb_000417_170 Hb_002611_010 Hb_002611_010 Hb_030959_010--Hb_002611_010 Hb_000117_030 Hb_000117_030 Hb_000521_090--Hb_000117_030 Hb_000521_090--Hb_002681_080 Hb_000521_090--Hb_004735_020 Hb_007933_030 Hb_007933_030 Hb_000521_090--Hb_007933_030 Hb_000062_400 Hb_000062_400 Hb_000521_090--Hb_000062_400 Hb_010757_030 Hb_010757_030 Hb_002681_080--Hb_010757_030 Hb_007002_010 Hb_007002_010 Hb_002681_080--Hb_007002_010 Hb_000599_230 Hb_000599_230 Hb_002681_080--Hb_000599_230 Hb_003077_130 Hb_003077_130 Hb_002681_080--Hb_003077_130 Hb_000352_220 Hb_000352_220 Hb_002681_080--Hb_000352_220 Hb_000300_020 Hb_000300_020 Hb_000056_090--Hb_000300_020 Hb_000056_090--Hb_000352_220 Hb_009020_040 Hb_009020_040 Hb_000056_090--Hb_009020_040 Hb_001080_070 Hb_001080_070 Hb_000056_090--Hb_001080_070 Hb_010288_060 Hb_010288_060 Hb_000056_090--Hb_010288_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.169 25.7137 13.6922 48.9344 18.6836 19.7759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5162 6.69422 9.24188 13.6464 97.0972

CAGE analysis