Hb_000521_090

Information

Type -
Description -
Location Contig521: 60746-63719
Sequence    

Annotation

kegg
ID rcu:RCOM_1775920
description zinc finger protein, putative
nr
ID XP_012092596.1
description PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID A0A067JLJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05262 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46698: 61088-63691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_090 0.0 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
2 Hb_000117_030 0.1137114338 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
3 Hb_002681_080 0.1178221365 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
4 Hb_004735_020 0.1197799856 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
5 Hb_007933_030 0.1202658936 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
6 Hb_000062_400 0.1267857546 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005375_110 0.1292428242 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
8 Hb_000120_860 0.1313607344 - - nucellin, putative [Ricinus communis]
9 Hb_009252_010 0.1339101984 - - PREDICTED: kinesin light chain [Jatropha curcas]
10 Hb_000172_380 0.1345442811 - - small heat-shock protein, putative [Ricinus communis]
11 Hb_030959_010 0.1368646699 - - cullin, putative [Ricinus communis]
12 Hb_000352_220 0.1390345184 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
13 Hb_000270_660 0.1413097032 - - purine permease, putative [Ricinus communis]
14 Hb_002010_110 0.1465666164 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
15 Hb_001009_260 0.1502774165 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
16 Hb_007002_010 0.1509305219 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
17 Hb_000056_090 0.1519892317 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]
18 Hb_000834_080 0.1525281759 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
19 Hb_000300_020 0.1540204394 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
20 Hb_000023_210 0.1555343077 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000521_090 Hb_000521_090 Hb_000117_030 Hb_000117_030 Hb_000521_090--Hb_000117_030 Hb_002681_080 Hb_002681_080 Hb_000521_090--Hb_002681_080 Hb_004735_020 Hb_004735_020 Hb_000521_090--Hb_004735_020 Hb_007933_030 Hb_007933_030 Hb_000521_090--Hb_007933_030 Hb_000062_400 Hb_000062_400 Hb_000521_090--Hb_000062_400 Hb_005375_110 Hb_005375_110 Hb_000521_090--Hb_005375_110 Hb_009079_050 Hb_009079_050 Hb_000117_030--Hb_009079_050 Hb_003462_040 Hb_003462_040 Hb_000117_030--Hb_003462_040 Hb_012799_190 Hb_012799_190 Hb_000117_030--Hb_012799_190 Hb_003226_250 Hb_003226_250 Hb_000117_030--Hb_003226_250 Hb_000270_660 Hb_000270_660 Hb_000117_030--Hb_000270_660 Hb_010757_030 Hb_010757_030 Hb_002681_080--Hb_010757_030 Hb_007002_010 Hb_007002_010 Hb_002681_080--Hb_007002_010 Hb_000599_230 Hb_000599_230 Hb_002681_080--Hb_000599_230 Hb_003077_130 Hb_003077_130 Hb_002681_080--Hb_003077_130 Hb_000352_220 Hb_000352_220 Hb_002681_080--Hb_000352_220 Hb_001009_260 Hb_001009_260 Hb_004735_020--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_004735_020--Hb_000120_860 Hb_003682_070 Hb_003682_070 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_010344_030 Hb_010344_030 Hb_004735_020--Hb_010344_030 Hb_130589_010 Hb_130589_010 Hb_004735_020--Hb_130589_010 Hb_001195_370 Hb_001195_370 Hb_007933_030--Hb_001195_370 Hb_001080_150 Hb_001080_150 Hb_007933_030--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_007933_030--Hb_001793_030 Hb_000300_680 Hb_000300_680 Hb_007933_030--Hb_000300_680 Hb_020400_020 Hb_020400_020 Hb_007933_030--Hb_020400_020 Hb_004306_110 Hb_004306_110 Hb_000062_400--Hb_004306_110 Hb_000390_190 Hb_000390_190 Hb_000062_400--Hb_000390_190 Hb_000684_390 Hb_000684_390 Hb_000062_400--Hb_000684_390 Hb_000062_400--Hb_004735_020 Hb_021495_020 Hb_021495_020 Hb_000062_400--Hb_021495_020 Hb_001049_150 Hb_001049_150 Hb_000062_400--Hb_001049_150 Hb_005375_110--Hb_004735_020 Hb_005375_110--Hb_000120_860 Hb_030959_010 Hb_030959_010 Hb_005375_110--Hb_030959_010 Hb_005375_110--Hb_002681_080 Hb_000056_090 Hb_000056_090 Hb_005375_110--Hb_000056_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5529 10.1431 14.8436 39.6105 8.33829 6.46728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5881 5.15222 6.73117 8.31178 80.595

CAGE analysis