Hb_000599_230

Information

Type -
Description -
Location Contig599: 215262-219056
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_230 0.0 - - -
2 Hb_004735_020 0.1174320139 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
3 Hb_002681_080 0.1235907124 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
4 Hb_002740_190 0.124570877 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
5 Hb_010757_030 0.1264826042 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000479_170 0.1275336268 - - chaperone clpb, putative [Ricinus communis]
7 Hb_025477_050 0.1323343984 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000172_350 0.1337700341 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
9 Hb_007313_100 0.1386694472 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
10 Hb_012165_020 0.1400506695 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
11 Hb_005250_010 0.1413547985 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
12 Hb_003632_030 0.1434865093 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
13 Hb_001080_070 0.1445798859 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
14 Hb_010344_030 0.1460207956 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011616_020 0.1467274469 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
16 Hb_000629_070 0.1476277079 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
17 Hb_000069_490 0.1483944095 - - conserved hypothetical protein [Ricinus communis]
18 Hb_016760_010 0.1499650463 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_003475_020 0.1506429079 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
20 Hb_004785_070 0.1516676643 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_230 Hb_000599_230 Hb_004735_020 Hb_004735_020 Hb_000599_230--Hb_004735_020 Hb_002681_080 Hb_002681_080 Hb_000599_230--Hb_002681_080 Hb_002740_190 Hb_002740_190 Hb_000599_230--Hb_002740_190 Hb_010757_030 Hb_010757_030 Hb_000599_230--Hb_010757_030 Hb_000479_170 Hb_000479_170 Hb_000599_230--Hb_000479_170 Hb_025477_050 Hb_025477_050 Hb_000599_230--Hb_025477_050 Hb_001009_260 Hb_001009_260 Hb_004735_020--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_004735_020--Hb_000120_860 Hb_003682_070 Hb_003682_070 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_010344_030 Hb_010344_030 Hb_004735_020--Hb_010344_030 Hb_130589_010 Hb_130589_010 Hb_004735_020--Hb_130589_010 Hb_000521_090 Hb_000521_090 Hb_002681_080--Hb_000521_090 Hb_002681_080--Hb_010757_030 Hb_007002_010 Hb_007002_010 Hb_002681_080--Hb_007002_010 Hb_003077_130 Hb_003077_130 Hb_002681_080--Hb_003077_130 Hb_000352_220 Hb_000352_220 Hb_002681_080--Hb_000352_220 Hb_000803_240 Hb_000803_240 Hb_002740_190--Hb_000803_240 Hb_010984_010 Hb_010984_010 Hb_002740_190--Hb_010984_010 Hb_016760_010 Hb_016760_010 Hb_002740_190--Hb_016760_010 Hb_001723_030 Hb_001723_030 Hb_002740_190--Hb_001723_030 Hb_000069_490 Hb_000069_490 Hb_002740_190--Hb_000069_490 Hb_028707_110 Hb_028707_110 Hb_002740_190--Hb_028707_110 Hb_010757_030--Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_010757_030--Hb_003878_080 Hb_010757_030--Hb_028707_110 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140 Hb_010757_030--Hb_016760_010 Hb_007769_040 Hb_007769_040 Hb_000479_170--Hb_007769_040 Hb_011931_060 Hb_011931_060 Hb_000479_170--Hb_011931_060 Hb_005250_010 Hb_005250_010 Hb_000479_170--Hb_005250_010 Hb_000479_170--Hb_025477_050 Hb_005211_020 Hb_005211_020 Hb_000479_170--Hb_005211_020 Hb_007545_130 Hb_007545_130 Hb_000479_170--Hb_007545_130 Hb_013405_080 Hb_013405_080 Hb_025477_050--Hb_013405_080 Hb_025477_050--Hb_007769_040 Hb_001472_160 Hb_001472_160 Hb_025477_050--Hb_001472_160 Hb_000144_060 Hb_000144_060 Hb_025477_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_025477_050--Hb_000345_370 Hb_001660_120 Hb_001660_120 Hb_025477_050--Hb_001660_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15595 0.0802006 0.107825 0.16686 0.0907128 0.145969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0711394 0.0279818 0.05233 0.123065 0.524207

CAGE analysis