Hb_002740_190

Information

Type -
Description -
Location Contig2740: 223668-230246
Sequence    

Annotation

kegg
ID rcu:RCOM_1437190
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012088793.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q8L7S8
description DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2
trembl
ID A0A067JUV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23147 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dead-box atp-dependent rna helicase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28688: 223808-230144
cDNA
(Sanger)
(ID:Location)		 041_J15.ab1: 223829-225861

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_190 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
2 Hb_000803_240 0.0969927883 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
3 Hb_010984_010 0.1031673894 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_016760_010 0.1100505588 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001723_030 0.1122849828 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
6 Hb_000069_490 0.1128283112 - - conserved hypothetical protein [Ricinus communis]
7 Hb_028707_110 0.1165695244 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
8 Hb_001408_030 0.1202632201 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
9 Hb_010757_030 0.1232544541 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_010344_030 0.1240966104 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000345_370 0.1243618376 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
12 Hb_000599_230 0.124570877 - - -
13 Hb_002282_070 0.1250412497 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
14 Hb_001437_120 0.1261440929 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
15 Hb_000309_020 0.1265492725 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
16 Hb_025477_050 0.1273204772 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_002027_410 0.1282779986 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
18 Hb_016461_030 0.1286974567 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_090530_010 0.1297321757 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
20 Hb_005618_150 0.1304419798 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002740_190 Hb_002740_190 Hb_000803_240 Hb_000803_240 Hb_002740_190--Hb_000803_240 Hb_010984_010 Hb_010984_010 Hb_002740_190--Hb_010984_010 Hb_016760_010 Hb_016760_010 Hb_002740_190--Hb_016760_010 Hb_001723_030 Hb_001723_030 Hb_002740_190--Hb_001723_030 Hb_000069_490 Hb_000069_490 Hb_002740_190--Hb_000069_490 Hb_028707_110 Hb_028707_110 Hb_002740_190--Hb_028707_110 Hb_000803_240--Hb_001723_030 Hb_000803_240--Hb_010984_010 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002217_140 Hb_002217_140 Hb_000803_240--Hb_002217_140 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030 Hb_000803_220 Hb_000803_220 Hb_010984_010--Hb_000803_220 Hb_008616_040 Hb_008616_040 Hb_010984_010--Hb_008616_040 Hb_007576_180 Hb_007576_180 Hb_010984_010--Hb_007576_180 Hb_018043_020 Hb_018043_020 Hb_010984_010--Hb_018043_020 Hb_010984_010--Hb_016760_010 Hb_001009_260 Hb_001009_260 Hb_016760_010--Hb_001009_260 Hb_003142_010 Hb_003142_010 Hb_016760_010--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_016760_010--Hb_001080_070 Hb_010344_030 Hb_010344_030 Hb_016760_010--Hb_010344_030 Hb_010757_030 Hb_010757_030 Hb_016760_010--Hb_010757_030 Hb_001723_030--Hb_002217_140 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430 Hb_003878_080 Hb_003878_080 Hb_000069_490--Hb_003878_080 Hb_024714_080 Hb_024714_080 Hb_000069_490--Hb_024714_080 Hb_000069_490--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000069_490--Hb_003077_130 Hb_000069_490--Hb_010757_030 Hb_000997_140 Hb_000997_140 Hb_000069_490--Hb_000997_140 Hb_001437_120 Hb_001437_120 Hb_028707_110--Hb_001437_120 Hb_028707_110--Hb_000997_140 Hb_028707_110--Hb_010757_030 Hb_028707_110--Hb_003077_130 Hb_003929_220 Hb_003929_220 Hb_028707_110--Hb_003929_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6353 9.0872 26.2713 15.3393 11.8397 21.2014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.41632 4.48724 6.08406 14.6282 74.8262

CAGE analysis